added ngme2 supprot

rafaelcabral96 · Oct 31, 2024 · 163ac4e · 163ac4e
1 parent 4304d44
commit 163ac4e
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Showing 4 changed files with 6 additions and 5 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -11,10 +11,11 @@ Encoding: UTF-8
 LazyData: true
 RoxygenNote: 7.2.1
 Imports:
-    ngme,
+    ngme2,
     foreach,
     Matrix,
-    Rcpp
+    Rcpp,
+    latex2exp
 Depends:
     INLA,
     GIGrvg

diff --git a/R/ngvb-package.R b/R/ngvb-package.R
@@ -4,7 +4,7 @@
 #' @import ggplot2
 ## usethis namespace: start
 #' @importFrom Rcpp sourceCpp
-#' @importFrom ngme rGIG
+#' @importFrom ngme2 rGIG
 #' @importFrom scales hue_pal
 #' @importFrom latex2exp TeX
 #' @importFrom ggpubr ggarrange

diff --git a/R/plotfunctions.R b/R/plotfunctions.R
@@ -97,7 +97,7 @@ plot.gaussdiag <- function(x, n = rep(0,nrow(x$BF.check)), samples = NULL, ...){
                    size=1.5) +
         scale_colour_manual("",
                             values = c("s(\\mathbf{y}^{pred})" = "black", "s(\\mathbf{y})" = color.vector[i]),
-                            labels = c(TeX("s(\\mathbf{y}^{pred})"),TeX("s(\\mathbf{y})")))+
+                            labels = c(TeXlibrary("s(\\mathbf{y}^{pred})"),TeX("s(\\mathbf{y})")))+
         xlab("BF sensitivity") +
         ylab("density") +
         xlim(min(-4*sds[i], x$BF.check$s0.mode[i]*1.1), max(4*sds[i], x$BF.check$s0.mode[i]*1.1)) +

diff --git a/README.md b/README.md
@@ -9,7 +9,7 @@ It requires the packages `INLA` and `ngme` which can be installed by:
 
 ```
 install.packages("INLA",repos=c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/testing"), dep=TRUE)
-remotes::install_github("davidbolin/ngme", ref = "devel")
+remotes::install_github("davidbolin/ngme2", ref = "devel")
 ```
 
 The `ngvb` package can be installed using the command: