The version here tagged of the repository is the version with all codes and pipelines to reproduce the analysis and figures published in the paper entitled: "Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the United States" submitted to Cell Reports/Cell Systems.
A preprint version of the following version is available here: https://www.medrxiv.org/content/10.1101/2023.11.07.23298178v2
preprint DOI: https://doi.org/10.1101/2023.11.07.23298178
Zenodo DOI: https://doi.org/10.5281/zenodo.11074203