modified function statement for simulate evaluate method and usage in…

… main
raphael-group · Jan 12, 2025 · 2c52ed4 · 2c52ed4
1 parent e0273a5
commit 2c52ed4
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 2 deletions.
diff --git a/src/dialect/__main__.py b/src/dialect/__main__.py
@@ -73,7 +73,11 @@ def main():
         else:  # args.mode == "evaluate"
             logging.info("Evaluating methods on simulated data")
             if args.type == "single":
-                evaluate_single_gene_simulation()
+                evaluate_single_gene_simulation(
+                    params=args.params,
+                    data=args.data,
+                    out=args.out,
+                )
             else:  # args.type == "pair"
                 logging.info("Evaluating methods on simulated data for a pair of genes")
                 raise NotImplementedError

diff --git a/src/dialect/utils/simulate.py b/src/dialect/utils/simulate.py
@@ -293,6 +293,6 @@ def create_single_gene_simulation(
 # ---------------------------------------------------------------------------- #
 #                     SIMULATION EVALUATION MAIN FUNCTIONS                     #
 # ---------------------------------------------------------------------------- #
-def evaluate_single_gene_simulation():
+def evaluate_single_gene_simulation(params, data, out):
     logging.info("Evaluating DIALECT on simulated data for a single gene")
     raise NotImplementedError