generated decoy gene lists for top 100 mutated genes across all TCGA …

…PanCancer subtypes

data/decoy_genes/ACC_decoy_genes.txt

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+MUC16_M
+TTN_M
+RYR2_M
+PKHD1_M
+PCDH15_M
+HMCN1_M
+ASXL3_M
+CNTNAP5_M
+OBSCN_M
+FBN2_M
+USH2A_M
+ANK2_M
+SVEP1_M
+CUBN_M
+AHNAK2_M
+CMYA5_M
+DST_M
+CSMD3_M
+SPTA1_M
+CSMD1_M
+HUWE1_M
+KIF26B_M
+LRP1_M
+FLG_M
+FLG2_M
+SPHKAP_M
+STAB1_M
+XIRP2_M
+GPR98_M
+PEG3_M
+GPR158_M
+GPR112_M
+TSHZ3_M
+PCDH11X_M
+FRAS1_M
+AIM1_M
+DMD_M
+WDFY4_M
+TENM2_M
+HRNR_M
+ZNF831_M
+ANKRD30A_M
+PAPPA2_M
+HIVEP1_M
+ZNF804B_M
+LAMA1_M
+LAMA2_M
+MXRA5_M
+OTOGL_M
+PCDH7_M
+EYS_M
+APOB_M
+FAM135B_M
+FAT3_M
+LYST_M
+AGBL1_M
+TRPV4_M
+PAPPA_M
+JHDM1D_M
+PLXNB3_M
+KIF5A_M
+PRDM9_M
+ITPR3_M
+PLEKHG6_M
+IQSEC2_M
+KCNH1_M
+ZFHX4_M
+GRIN3A_M
+RYR3_M
+KCNH7_M
+SCAF4_M
+SCN11A_M
+SCN2A_M
+LPPR4_M
+FRMPD4_M
+KCNJ12_M
+LRRC7_M
+TTC40_M
+FBN3_M
+ROBO2_M
+CPXM2_M
+NLRP8_M
+SORCS3_M
+CENPE_M
+TENM3_M
+DNAH9_M

data/decoy_genes/BLCA_decoy_genes.txt

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+TTN_M
+MUC16_M
+SYNE1_M
+BIRC6_M
+FLG_M
+HMCN1_M
+RYR2_M
+OBSCN_M
+CSMD3_M
+XIRP2_M
+AHNAK_M
+SYNE2_M
+DNAH5_M
+FAT3_M
+AHNAK2_M
+MUC17_M
+DNAH11_M
+CUBN_M
+RYR1_M
+RYR3_M
+GPR98_M
+ZFHX4_M
+AKAP9_M
+SACS_M
+ANK2_M
+DNAH8_M
+UBR4_M
+TCHH_M
+MDN1_M
+USH2A_M
+SPTAN1_M
+DNAH7_M
+PLEC_M
+USP34_M
+DNAH17_M
+UTRN_M
+SPTA1_M
+DNAH3_M
+MYCBP2_M
+LAMA3_M
+LRP2_M
+DMXL2_M
+CHD7_M
+KIAA1109_M
+DIDO1_M
+VPS13D_M
+VCAN_M
+GOLGB1_M
+DCHS2_M
+VPS13B_M
+TENM3_M
+ANK3_M
+SRCAP_M
+MUC5B_M
+SRRM2_M
+DST_M
+TNXB_M
+FREM2_M
+DMD_M
+LRP1_M
+DNAH9_M
+ANKHD1-EIF4EBP3_M
+TRIO_M
+MYO9A_M
+BDP1_M
+HERC1_M
+DYNC1H1_M
+FRAS1_M
+PKHD1_M

data/decoy_genes/BRCA_decoy_genes.txt

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+TTN_M
+MUC16_M
+RYR2_M
+FLG_M
+SYNE1_M
+HMCN1_M
+USH2A_M
+DMD_M
+ZFHX4_M
+OBSCN_M
+SYNE2_M
+MUC17_M
+SPTA1_M
+CSMD3_M
+FAT3_M
+HUWE1_M
+RYR3_M
+CSMD1_M
+DST_M
+CACNA1E_M
+XIRP2_M
+PRUNE2_M
+GPR98_M
+LRP2_M
+PKHD1L1_M
+MDN1_M
+APOB_M
+AHNAK_M
+CMYA5_M
+ABCA13_M
+DNAH9_M
+DNAH17_M
+DNAH11_M
+MXRA5_M
+MUC5B_M
+AKAP9_M
+CSMD2_M
+ANK3_M
+MYCBP2_M
+DNAH6_M
+SACS_M
+DNAH8_M
+ASPM_M
+RYR1_M
+TEX15_M
+HYDIN_M
+VPS13B_M
+KIAA1109_M
+UBR4_M
+VPS13C_M
+HERC1_M
+HERC2_M
+BIRC6_M
+F5_M
+DYNC1H1_M
+PAPPA2_M
+FCGBP_M
+TENM1_M
+WDFY4_M
+CENPE_M
+FLG2_M
+DNAH14_M
+MAP1A_M
+SVEP1_M
+LAMA1_M
+ANK2_M
+LYST_M
+CUBN_M
+KIAA1210_M
+ASH1L_M
+DNAH5_M
+TG_M
+LRP1_M
+PKHD1_M
+COL14A1_M
+FREM2_M
+AHCTF1_M
+AFF2_M
+DNAH10_M
+FMN2_M
+COL12A1_M

data/decoy_genes/CESC_decoy_genes.txt

@@ -0,0 +1,78 @@
+TTN_M
+MUC16_M
+SYNE1_M
+FLG_M
+RYR2_M
+SYNE2_M
+GPR98_M
+USH2A_M
+MDN1_M
+DMD_M
+MUC5B_M
+OBSCN_M
+CSMD1_M
+MUC17_M
+PLEC_M
+AHNAK2_M
+HUWE1_M
+HSPG2_M
+LRP2_M
+NAV3_M
+DST_M
+DNAH8_M
+DNAH6_M
+TENM1_M
+HYDIN_M
+DNAH10_M
+GOLGB1_M
+DYNC1H1_M
+DNAH2_M
+PKD1_M
+FSIP2_M
+HMCN1_M
+ANK2_M
+CHD7_M
+UBR4_M
+RYR3_M
+COL6A3_M
+PLXNA3_M
+VCAN_M
+SRCAP_M
+FRAS1_M
+CUBN_M
+RYR1_M
+PLCH1_M
+ZFHX4_M
+DCHS1_M
+FLNA_M
+GPR112_M
+APOB_M
+TCHH_M
+DNAH11_M
+GTF3C1_M
+CSMD3_M
+ANK3_M
+TEX15_M
+EYS_M
+DNAH5_M
+DNAH7_M
+PTPRF_M
+MYH15_M
+IGSF10_M
+ZSWIM8_M
+BIRC6_M
+ABCA13_M
+BSN_M
+DSP_M
+LAMA5_M
+GON4L_M
+TTN_N
+DYNC2H1_M
+COL6A5_M
+VPS13D_M
+FAT2_M
+NIPBL_M
+BRWD3_M
+WDFY4_M
+AHNAK_M
+BOD1L1_M