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@rat-genome-database

Rat Genome Database

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  1. rgd-core-library rgd-core-library Public

    Domain layer and shared components

    Java

  2. rgd-web-application rgd-web-application Public

    Code used by the RGD web site and tools

    JavaScript 1

  3. rgd-web-services rgd-web-services Public

    Swagger implementation

    Java

  4. rgd-annotation-files rgd-annotation-files Public

    GO annotation files in GAF, GPAD and GPI format

Repositories

Showing 10 of 144 repositories
  • rna-seq-pipeline Public
    rat-genome-database/rna-seq-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Jan 29, 2025
  • eva-pipeline Public

    Load variants from EVA for Rat, Dog, Green Monkey, Mouse, and Pig.

    rat-genome-database/eva-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Jan 28, 2025
  • hrdp-variant-load-pipeline Public

    Load the HRDP Variants into variant visualizer

    rat-genome-database/hrdp-variant-load-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Jan 28, 2025
  • RDO-Disease-Ontology Public
    rat-genome-database/RDO-Disease-Ontology’s past year of commit activity
    0 0 1 0 Updated Jan 28, 2025
  • RS-Rat-Strain-Ontology Public

    Rat strain ontology maintained by RGD

    rat-genome-database/RS-Rat-Strain-Ontology’s past year of commit activity
    0 2 0 1 Updated Jan 28, 2025
  • CMO-Clinical-Measurement-Ontology Public

    Clinical Measurement Ontology (CMO) maintained by RGD

    rat-genome-database/CMO-Clinical-Measurement-Ontology’s past year of commit activity
    3 4 9 2 Updated Jan 28, 2025
  • gff3-pipeline Public

    Creates gff3 files to be loaded into RGD JBrowse instance.

    rat-genome-database/gff3-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Jan 28, 2025
  • hgnc-pipeline Public

    Handles obsolete HGNC IDs for human genes.

    rat-genome-database/hgnc-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Jan 27, 2025
  • pubmed-crawler2 Public
    rat-genome-database/pubmed-crawler2’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Jan 27, 2025
  • rgd-core-library Public

    Domain layer and shared components

    rat-genome-database/rgd-core-library’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Jan 27, 2025
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