build.xml

<project name="PubmedCrawler2" default="dist" basedir=".">

    <property name="svn.head.revision" value="17116"/>
    <property name="bin.dir" value="scripts"/>
    <property name="src.dir" value="src"/>
    <property name="build.dir" value="classes"/>
    <property name="lib.dir" value="lib"/>
    <property name="dist.dir" value="dist"/>
	<property name="download.dir" value="download"/>
	<property name="PMCPapers.dir" value="PMCPapers"/>
	<property name="PubMedIDs.dir" value="PubMedIDs"/>
	<property name="prop.dir" value="properties"/>
	<property name="logs.dir" value="logs"/>
	<property name="download-logs.dir" value="download-logs"/>
	<property name="name" value="PubmedCrawler2"/>


    <path id="master-classpath">
        <fileset dir="${lib.dir}">
            <include name="**/*.jar"/>
        </fileset>
    </path>

    <!-- Remove old build files -->
	<target name="clean" description="Clean output directories">
	        <delete dir="${build.dir}" failonerror="false"/>
            <delete dir="${dist.dir}" failonerror="false"/>
	        <delete file="${lib.dir}/${name}.jar" failonerror="false"/>
	 </target>

    <!--Prepare for build -->
    <target name="prepare" depends="clean" description="Prepare for build">
        <mkdir dir="${build.dir}"/>
        <mkdir dir="${lib.dir}"/>
    	<mkdir dir="${logs.dir}"/>
        <mkdir dir="${prop.dir}"/>
		<mkdir dir="${download.dir}"/>
		<mkdir dir="${download-logs.dir}"/>
		<mkdir dir="${PubMedIDs.dir}"/>
		<mkdir dir="${PMCPapers.dir}"/>
    </target>

    <!-- Compile all of our class files -->
    <target name="build" depends="prepare" description="Compile main source tree java files and build war file">
        <javac destdir="${build.dir}" target="1.7" source="1.7" debug="true"
               deprecation="false" optimize="false" failonerror="true">
            <src path="${src.dir}"/>
            <classpath refid="master-classpath"/>
        </javac>

       <!-- automatically create manifest.file -->
       <delete file="MANIFEST.FM"/>
       <tstamp>
          <format property="TODAY" pattern="yyyy-MM-dd HH:mm:ss" />
       </tstamp>
       <pathconvert property="mf.classpath" pathsep=" " dirsep="/">
           <path refid="master-classpath" />
           <chainedmapper>
               <flattenmapper />  
	           <globmapper from="*.jar" to="lib/*.jar" />
           </chainedmapper>
       </pathconvert>
       <manifest file="MANIFEST.FM">
           <attribute name="Main-Class" value="edu.mcw.rgd.nlp.utils.ncbi.PubMedLibrary"/>
           <attribute name="Built-By" value="${user.name}"/>
           <attribute name="Built-Date" value="${TODAY}"/>
           <attribute name="Class-Path" value="${mf.classpath}"/>
           <attribute name="RGD-Svn-Revision" value="${svn.head.revision}"/>
       </manifest>
       <jar destfile="${lib.dir}/${name}.jar" manifest="MANIFEST.FM">
           <fileset dir="${build.dir}"/>
       </jar>
        <delete file="MANIFEST.FM"/>
    </target>

    <!-- create distribution directory -->
    <target name="dist" depends="build" description="Create distribution directory with files ready for deployment">
        <mkdir dir="${dist.dir}"/>
        <copy todir="${dist.dir}">
            <fileset dir="${bin.dir}">
                <include name="*.sh" />
            </fileset>
        </copy>
		
		<mkdir dir="${download.dir}"/>
		<copy todir="${download.dir}">
            <fileset dir="${download.dir}"/>
        </copy>
		
		<mkdir dir="${download-logs.dir}"/>
		<copy todir="${download-logs.dir}">
            <fileset dir="${download-logs.dir}"/>
        </copy>
		
		<mkdir dir="${dist.dir}/${prop.dir}"/>
        <copy todir="${dist.dir}/${prop.dir}">
            <fileset dir="${prop.dir}"/>
        </copy>
        <mkdir dir="${dist.dir}/${lib.dir}"/>
        <mkdir dir="${dist.dir}/${logs.dir}"/>
        <copy todir="${dist.dir}/${lib.dir}">
            <fileset dir="${lib.dir}">
                <include name="**/*.jar"/>
            </fileset>
        </copy>
        <move todir="${dist.dir}" file="${dist.dir}/${lib.dir}/${name}.jar"/>
        

    </target>

    <target name="dist+docs" depends="dist" description="Create distribution with javadoc">
        <mkdir dir="docs"/>
        <javadoc
               destdir="docs/${name}"
               author="true"
               version="true"
               use="true"
               windowtitle="${name}">

        <classpath refid="master-classpath"/>
        <fileset dir="src" defaultexcludes="yes">

        </fileset>
      </javadoc>
    </target>

    <target name="update_rgdcore" description="Copy rgdcore_1.1.3.jar from rgdcore project to lib directory">
        <copy file="../../../web/java/rgdcore/trunk/dist/rgdcore_1.1.3.jar" tofile="${lib.dir}/rgdcore_1.1.3.jar"/>
    </target>
	<target name="create-jar">
	        <jar destfile="dist/PubmedCrawler.jar" filesetmanifest="mergewithoutmain">
	            <manifest>
	                <attribute name="Class-Path" value="."/>
	            </manifest>
	            <fileset dir="bin"/>

	<zipfileset excludes="META-INF/*.SF" src="lib/commons-io-2.4.jar"/>
	<zipfileset excludes="META-INF/*.SF" src="lib/commons-logging-1.1.1.jar"/>
	<zipfileset excludes="META-INF/*.SF" src="lib/commons-net-2.2.jar"/>
	<zipfileset excludes="META-INF/*.SF" src="lib/httpclient-4.2.3.jar"/>
	<zipfileset excludes="META-INF/*.SF" src="lib/httpcore-4.2.2.jar"/>
	<zipfileset excludes="META-INF/*.SF" src="lib/jaxen-1.1.4.jar"/>
	<zipfileset excludes="META-INF/*.SF" src="lib/jsoup-1.8.3.jar"/>
	<zipfileset excludes="META-INF/*.SF" src="lib/log4j-1.2.16.jar"/>
	<zipfileset excludes="META-INF/*.SF" src="lib/rgdcore_1.1.3.jar"/>
	<zipfileset excludes="META-INF/*.SF" src="lib/xom-1.2.8.jar"/>
</jar>
	    </target>
	
</project>