docker compose rebuild, import lms search to global_functions

Dockerfile

@@ -1,7 +1,20 @@
-FROM python:3.12-bookworm
+FROM python:3.12
 
+# Set the working directory in the container
+WORKDIR /app
+
+# Copy the requirements file into the container
 COPY requirements.txt .
 
-RUN pip install -r requirements.txt
+# Create a virtual environment
+RUN python -m venv /app/venv
+
+# Upgrade pip and install the dependencies in the virtual environment
+RUN /app/venv/bin/pip install --upgrade pip
+RUN /app/venv/bin/pip install -r requirements.txt
 
+# Copy the rest of the application code
 COPY . .
+
+# Set the entrypoint to use the virtual environment's Python interpreter
+CMD ["python3"]

docker-compose.yml

@@ -1,4 +1,3 @@
-# NOTE The below is the Docker Compose specification version NOT the Python version:
 version: "3.12"
 
 services:
@@ -9,5 +8,4 @@ services:
     working_dir: /app
     tty: true # Allocate a pseudo-TTY
     stdin_open: true # Keep stdin open
-    command: |
-      pytest
+    container_name: rcpchgrowth-python

rcpchgrowth/global_functions.py

@@ -6,10 +6,11 @@
 from .trisomy_21 import trisomy_21_lms_array_for_measurement_and_sex
 from .cdc import cdc_lms_array_for_measurement_and_sex
 from .trisomy_21_aap import trisomy_21_aap_lms_array_for_measurement_and_sex
+from .who import who_lms_array_for_measurement_and_sex
 
 # from scipy import interpolate  #see below, comment back in if swapping interpolation method
 # from scipy.interpolate import CubicSpline #see below, comment back in if swapping interpolation method
-from .constants.reference_constants import MALE, UK_WHO, TURNERS, TRISOMY_21, BMI, CDC, TRISOMY_21_AAP, HEAD_CIRCUMFERENCE
+from .constants.reference_constants import UK_WHO, TURNERS, TRISOMY_21, BMI, CDC, TRISOMY_21_AAP, WHO
 
 
 """Public functions"""
@@ -585,6 +586,16 @@ def lms_value_array_for_measurement_for_reference(
             )
         except LookupError as error:
             raise LookupError(error)
+    elif reference == WHO:
+        try:
+            lms_value_array_for_measurement = who_lms_array_for_measurement_and_sex(
+                age=age,
+                measurement_method=measurement_method,
+                sex=sex,
+                default_youngest_reference=default_youngest_reference,
+            )
+        except LookupError as error:
+            raise LookupError(error)
     elif reference == TURNERS:
         try:
             lms_value_array_for_measurement = turner_lms_array_for_measurement_and_sex(

s/build

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+set -v  # Enable verbose mode
+set -e  # Exit on error
+
+# scripts may need to be made executable on some platforms before they can be run
+# chmod +x <filename> is the command to do this on unixy systems
+
+# starts all docker compose services
+docker-compose build