Tox tests

Changes out repo-file from accepting json to accepting yaml files. #554

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Run time

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Job	Run time
mypy	2m 1s
linting	28s
unit-tests (3.9)	1m 38s
unit-tests (3.10)	1m 48s
unit-tests (3.11)	1m 42s
coverage	2m 20s
docs	1m 50s
unit-tests (3.12)	1m 49s
security	2m 12s
unit-tests (3.13)	1m 56s
	17m 44s