processing vignette 'clustifyr.Rmd' failed with diagnostics:

Vignette re-building failed.

Failed to install 'clustifyr' from local:

Process completed with exit code 1.

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

dependency 'rjson' is not available

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "geo-annotations", and the latter is "Improving NCBI GEO submissions of scRNA-seq data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.