valr 0.8.3

• read_bigwig() now uses cpp11bigwig on CRAN. The set_strand param was removed to be
  more consistent with expected bigWig contents.

• read_gtf() was deprecated. The rtracklayer package used
  for this functionality is no longer a dependency of valr due to errors from
  CRAN AddressSantizer checks of the UCSC c-library code vendored in rtracklayer.

• valr now depends on R >= 4.0.0.

valr 0.8.2

• Address NOTE on CRAN about Rd link targets.

• Change maintainer email address.

valr 0.8.1

• Make vdiffr dependency optional during package testing.

valr 0.8.0

• Added bed_genomecov() to compute interval coverage across a genome.

valr 0.7.0

• read_bed and related functions now automatically calculate the fields. Use of n_fields was deprecated.

valr 0.6.8

• bed_closest() now reports all x intervals, even when there are no closest y intervals (e.g. when there is no matching chromosome in y intervals). These intervals are returned populated with NA for .overlap, .dist and y interval locations.

• Reimplemented bed_closest() to use binary search rather than an interval tree search. The closest y interval can be missed with the previous search strategy in high depth interval trees.

• Fix off by one error when using max_dist argument in bed_cluster() (#401).

v0.6.7

• Removed SystemRequirements from DESCRIPTION to eliminate a NOTE on CRAN.

• bed_coverage() now reports intervals from x with no matching group in y (#395).

v0.6.6

What's Changed

• improvements for interactive use by @jayhesselberth in #393
• update intervaltree by @kriemo in #391

Full Changelog: v0.6.5...v0.6.6

valr 0.6.5

• Handle max_dist for first intervals in bed_cluster() (#388)

v0.6.4

Minor changes

• Fixed intron score numbering error in create_introns (#377 @sheridar)

• Fixed bug in handling of list inputs for bed_intersect()(#380 @sheridar)

• Added read_bigwig and read_gtf functions to import data into valr compatible tibbles (#379)

• Kent Riemondy is now maintainer.