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Ryuichiro Nakato
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Mar 5, 2024
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| #!/usr/bin/env perl | ||
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| use strict; | ||
| use warnings; | ||
| use Path::Class; | ||
| use Excel::Writer::XLSX; | ||
| use Getopt::Long qw/:config posix_default no_ignore_case bundling auto_help/; | ||
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| my @input = (); | ||
| my $output = ""; | ||
| my $delim = "\t"; | ||
| my @name = (); | ||
| GetOptions('input|i=s' => \@input, 'output|o=s' => \$output, 'delim|d=s' => \$delim, 'name|n=s' => \@name); | ||
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| if($#input ==-1 || $output eq ""){ | ||
| print " csv2xlsx.pl: merge csv file(s) to xlsx.\n\n"; | ||
| print " Usage: csv2xlsx.pl -i <input.csv> [-i <input.csv> ...] -o output.xlsx\n\n"; | ||
| print " Options:\n\t-d --delim = <str>: delimiter of csv (default:\\t)\n\n"; | ||
| exit; | ||
| } | ||
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| my $workbook = Excel::Writer::XLSX->new($output); | ||
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| my %hash; | ||
| for(my $i=0; $i<=$#input; $i++) { | ||
| my $tabname; | ||
| if($#name ==-1) { | ||
| my $tabname_full=(split /\//,$input[$i])[-1]; | ||
| $tabname = substr($tabname_full, 0, 27); | ||
| while(exists($hash{$tabname})) { | ||
| $tabname = $tabname . "2"; | ||
| } | ||
| $hash{$tabname}=1; | ||
| }else { | ||
| $tabname = $name[$i]; | ||
| } | ||
| my $worksheet = $workbook->add_worksheet($tabname); | ||
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| my $file = file($input[$i]); | ||
| my $fh = $file->open('r') or die "Error: $input[$i] does not exist.\n"; | ||
| my $nrow=0; | ||
| while(<$fh>){ | ||
| chomp; | ||
| my @clm = split(/$delim/, $_); | ||
| for(my $j=0; $j<=$#clm; $j++) { $worksheet->write( $nrow, $j, $clm[$j]);} | ||
| $nrow++; | ||
| } | ||
| $fh->close; | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,8 +1,8 @@ | ||
| tag=0.12.1 | ||
| tag=0.12.2 | ||
| docker build -f Dockerfile.$tag -t rnakato/churros:$tag . #--no-cache | ||
| #docker save -o churros-$tag.tar rnakato/churros:$tag | ||
| #singularity build -F /work3/SingularityImages/churros.$tag.sif docker-archive://churros-$tag.tar | ||
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| #exit | ||
| docker push rnakato/churros:$tag | ||
| docker tag rnakato/churros:$tag rnakato/churros:latest | ||
| docker push rnakato/churros |