version 0.11.0

0.11.0 (2024-2-3)

• Added checkQC.py for checking the quality of the input ChIP-seq samples
  • checkQC.py outputs the warnings in Churros_result/<build>/QCcheck.log if the samples do not meet the quality criteria.
• Installed sudo
• Updated Miniconda from Python 3.9 to Python 3.10
• Updated Bowtie2 from v2.4.5 to v2.5.3
• Updated chromap from v0.2.4 to v0.2.5
• Updated ChromHMM from v1.24 to v1.25
• Updated ChromImpute from v1.0.3 to v1.0.5

0.10.9 (2024-1-30)

• Added STARE for enhancer-promoter analysis
• Updated SAMtools from 1.17 to 1.19.2
• Updated SRAtoolkit from 3.0.2 to 3.0.10

0.10.8 (2024-1-12)

• Added a script generate_samplelist_from_SRA.py that generates the sample list from SraExperimentPackage.xml and SraRunTable.txt.

0.10.7 (2023-12-31)

• Updated SSP (v1.3.0 -> v1.3.1) and DROMPA+ (v1.18.0 -> v1.18.1).
• Update Manual