Code and data for the manuscript "The probability of Plasmodium vivax acute malarial illness following primary infection and relapse in Papua New Guinea"
- Expected numbers of primary infections and relapses
- Code to output the expected numbers of primary infections and relapses by covariate category and two-month time interval
- Estimate the probability of clinical illness from expected numbers of primary infections and relapses (with the cumulative number of primary infections experienced, and covariates)
- Predict age-incidence curves for different transmission intensities and treatment coverages (embed the vivax components in OpenMalaria and compare the predictions with observed data from different settings)