MetaProViz: METabolomics pre-PRocessing, functiOnal analysis and VIZualisation
This is a small package release V2.1.4. where we added:
- New prior knowledge for enrichment analysis such as chemical classes for chemical class enrichment or pathways from gaude et al.
- New example data (proteomics and transcriptomics from ccRCC patients)
MetaProViz can analyse standard metabolomics and exometabolomics data (CoRe). It performs pre-processing including feature filtering, missing value imputation, normalisation and outlier detection. It perform functional analysis including differential metabolite analysis (DMA), clustering based on regulatory rules (MCA) and contains different visualisation methods to extract biological interpretable graphs and saves them in a publication ready format.