clang -rdynamic   -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o vcfhead.o HMM.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o csq.o vcfbuf.o mpileup.o bam2bcf.o bam2bcf_indel.o bam2bcf_iaux.o bam2bcf_edlib.o read_consensus.o bam_sample.o vcfsort.o cols.o extsort.o dist.o abuf.o ccall.o em.o prob1.o kmin.o str_finder.o gff.o edlib.o mpileup2/mpileup.o vcfplugin.o htslib/libhts.a -lpthread -lz -lm -lbz2 -llzma -lcurl  -lm -lz     -lpthread
clang   -o test/test-regidx test/test-regidx.o regidx.o htslib/libhts.a -lpthread -lz -lm -lbz2 -llzma -lcurl  -lpthread -lz  
ld: warning: ignoring duplicate libraries: '-lm', '-lpthread', '-lz'
ld: warning: ignoring duplicate libraries: '-lpthread', '-lz'
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/GTisec.so version.c plugins/GTisec.c  
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/GTsubset.so version.c plugins/GTsubset.c  
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/ad-bias.so convert.c version.c plugins/ad-bias.c  
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/add-variantkey.so version.c plugins/add-variantkey.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/af-dist.so bin.c version.c plugins/af-dist.c  
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/afs.so version.c plugins/afs.c  
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/allele-length.so version.c plugins/allele-length.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/check-ploidy.so version.c plugins/check-ploidy.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/check-sparsity.so version.c plugins/check-sparsity.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c  
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/contrast.so version.c plugins/contrast.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/counts.so version.c plugins/counts.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/dosage.so version.c plugins/dosage.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib     -o plugins/fill-from-fasta.so filter.c version.c plugins/fill-from-fasta.c  
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/fill-tags.so version.c plugins/fill-tags.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/fixploidy.so ploidy.c regidx.c version.c plugins/fixploidy.c  
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/fixref.so version.c plugins/fixref.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/frameshifts.so version.c plugins/frameshifts.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/guess-ploidy.so version.c plugins/guess-ploidy.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/gvcfz.so version.c plugins/gvcfz.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/impute-info.so version.c plugins/impute-info.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/indel-stats.so version.c plugins/indel-stats.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/isecGT.so smpl_ilist.c version.c plugins/isecGT.c  
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/mendelian2.so version.c plugins/mendelian2.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/missing2ref.so version.c plugins/missing2ref.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/parental-origin.so version.c plugins/parental-origin.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/prune.so version.c plugins/prune.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/remove-overlaps.so version.c plugins/remove-overlaps.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/scatter.so version.c plugins/scatter.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/setGT.so version.c plugins/setGT.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/smpl-stats.so version.c plugins/smpl-stats.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/split-vep.so version.c plugins/split-vep.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/split.so version.c plugins/split.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/tag2tag.so version.c plugins/tag2tag.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/trio-dnm2.so version.c plugins/trio-dnm2.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/trio-stats.so version.c plugins/trio-stats.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/trio-switch-rate.so version.c plugins/trio-switch-rate.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/variant-distance.so version.c plugins/variant-distance.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/variantkey-hex.so version.c plugins/variantkey-hex.c 
clang -bundle -bundle_loader bcftools -Wl,-undefined,dynamic_lookup -Wall -g -O2 -Werror -I. -Ihtslib    -o plugins/vcf2table.so version.c plugins/vcf2table.c 
plugins/vcf2table.c:619:16: error: comparison of array 'c.val->info' equal to a null pointer is always false [-Werror,-Wtautological-pointer-compare]
  619 |     if (c.val->info == NULL) continue;
      |         ~~~~~~~^~~~    ~~~~
plugins/vcf2table.c:728:24: error: setting buffer to a 'sizeof' expression; did you mean to transpose the last two arguments? [-Werror,-Wmemset-transposed-args]
  728 |   memset((void*)&args, sizeof(args_t), 1);
      |                        ^
plugins/vcf2table.c:728:24: note: cast the second argument to 'int' to silence
2 errors generated.
make: *** [plugins/vcf2table.so] Error 1

Exit status: 2