hide answers

Notebooks/SEROBA/Answers.ipynb

@@ -0,0 +1,38 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Answers\n",
+    "\n",
+    "1. `seroba createDBs database_60/ 60`\n",
+    "\n",
+    "2. 22A\n",
+    "\n",
+    "3. At least 10% of the reads were determined to have a different snp than the rest, i.e. there is contamination."
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.6.0"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}

Notebooks/SEROBA/seroba_results.ipynb

@@ -157,21 +157,19 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Now follows some questions for you to go over what you have learned in this tutorial one more time! You can find the answers at the bottom of the page.\n",
+    "Now follows some questions for you to go over what you have learned in this tutorial one more time! You can find the answers in the link at the bottom of the page.\n",
     "\n",
     "# Questions\n",
     "\n",
-    "**Your data requires you to use a kmer size of 60. You have already downloaded the database to a directory called database_60/. What command would you run to create a database for KMC and ARIBA with kmer size 60?**\n",
+    "**1. Your data requires you to use a kmer size of 60. You have already downloaded the database to a directory called database_60/. What command would you run to create a database for KMC and ARIBA with kmer size 60?**\n",
     "\n",
-    "*seroba createDBs database_60/ 60*\n",
     "\n",
-    "**What is the predicted serotype of sample7?**\n",
+    "**2. What is the predicted serotype of sample7?**\n",
     "\n",
-    "*22A*\n",
     "\n",
-    "**How would you interpret the comment for sample7?**\n",
+    "**3. How would you interpret the comment for sample7?**\n",
     "\n",
-    "*At least 10% of the reads were determined to have a different snp than the rest, i.e. there is contamination.*"
+    "[Answers](Answers.ipynb)"
    ]
   }
  ],