add vitessce docker file

.gitignore

@@ -16,6 +16,7 @@ src/*.dll
 **/seurat-objects/
 **/seurat_objects/
 **/vitessce/
+!docker/vitessce/
 **/.snakemake
 **/.snakemake_timestamp
 **/.wget-hsts

docker/vitessce/Dockerfile

@@ -0,0 +1,16 @@
+# Dockerfile for building references
+FROM satijalab/seurat:4.0.1
+
+# Install other R dependencies
+RUN R --no-echo --no-restore --no-save -e "install.packages('feather')"
+
+# Install Azimuth (0.3.2)
+RUN R --no-echo --no-restore --no-save -e "remotes::install_github('immunogenomics/presto')"
+RUN R --no-echo --no-restore --no-save -e "install.packages(c('DT', 'googlesheets4', 'shinyBS', 'shinydashboard', 'shinyjs'))"
+RUN R --no-echo --no-restore --no-save -e "BiocManager::install('glmGamPoi')"
+RUN R --no-echo --no-restore --no-save -e "remotes::install_github('satijalab/azimuth', ref = 'v0.3.0', dependencies = FALSE)"
+
+# Install python dependencies
+RUN pip3 install scanpy
+RUN pip3 install zarr
+