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Update CRAN comments
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dcollins15 committed Jan 23, 2025
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# Seurat v5.2.0
# Seurat v5.2.1
This update is a small patch release to address failing M1mac checks ahead of the deadline on 2025-01-28.

## Test environments
* local ubuntu 20.04 install, R 4.4.2
* win-builder (oldrelease, release, devel)
* mac-builder (devel)

We were unable to test on r-release on mac-builder because the portal seemed to point to the wrong version.
* macOS 14.6.1 (Apple M3, arm64, local install): R-release
* Ubuntu 22.04 (Docker container): R-release
* [win-builder](https://win-builder.r-project.org/): R-oldrelease, R-release, R-devel
* [macOS builder](https://mac.r-project.org/macbuilder/submit.html): R-release, R-devel

## R CMD check results
There were no ERRORs or WARNINGs but there was one NOTE.

There were no ERRORs or WARNINGs

There was one NOTE

❯ checking CRAN incoming feasibility ... [12s/61s] NOTE
```
❯ checking CRAN incoming feasibility ... [15s/92s] NOTE
Maintainer: ‘Rahul Satija <[email protected]>’
Suggests or Enhances not in mainstream repositories:
BPCells, enrichR, presto
Availability using Additional_repositories specification:
BPCells yes https://bnprks.r-universe.dev
enrichR yes https://cran.r-universe.dev
enrichR yes https://satijalab.r-universe.dev
presto yes https://satijalab.r-universe.dev
```

BPCells, enrichR, and presto are hosted on R-universe and used conditionally in Seurat.

## Downstream dependencies

There are 3 packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality.

There are 34 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAESAR.Suite, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PoweREST, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, SCIntRuler, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SpaCCI, SPECK, STREAK, and tidyseurat; this update does not impact their functionality.
`BPCells`, `enrichR`, and `presto` are hosted on R-universe and used conditionally in `Seurat`.

There are 27 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, easybio, grandR, harmony, laminr, mxfda, RESET, rliger, SCORPIUS, SCpubr, scregclust, Signac, SuperCell, treefit, and VAM; this update does not impact their functionality.
## Reverse dependency check results
We checked 65 reverse dependencies, comparing `R CMD check` results across the CRAN and dev versions of this package, and saw no new problems.

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