Parsers

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Manish Goel edited this page Oct 11, 2018 · 3 revisions

Contains scripts which can be used to format and extract data from standard file formats.

File Formats Supported

BAM
BLAT
FASTA
FASTQ
GFF
SAM
VCF

Fasta

Dividing a multi-fasta file into separate fasta files where each fasta contains one molecule sequence

cd separate_fasta_seqs               # open the directory
make                                 # compile
./fasta_separator input.fasta        # run

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