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[WIP] Unit tests connectivity#1102

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EmmaRenauld wants to merge 17 commits intoscilus:masterscilus/scilpy:masterfrom EmmaRenauld:unit_tests_connectivityEmmaRenauld/scilpy:unit_tests_connectivityCopy head branch name to clipboard

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Commits on Nov 29, 2024

• Compare populations: already good!

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• Normalize: already good!

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• reorder_rois: small cleaning of redundancy

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• Compute_pca: big refactor

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• typo

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Commits on Dec 12, 2024

• pairwise agreement

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• Graph measures ok. Making mask binary

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• connectivity math: did not check that ref_matrix exist. using load_matrix

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• Fix common edges mask

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• Fix pep8

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• Merge branch 'master' into next_connectivity

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• connectivity filter: add ref. Fix logging. Simplify

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• Merge branch 'master' into next_connectivity3

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• Merge branch 'next_connectivity2' into unit_tests_connectivity

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• Merge branch 'next_connectivity3' into unit_tests_connectivity

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• Test triu_connectivity from endpoints

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• First test matrix_tool

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