Scripts to project 3D and 4D maps to streamline points and perform math operations in space of streamline points#810

Merged

arnaudbore merged 79 commits intoscilus:masterfrom grahamlittlephd:Project-endpoint-data-to-streamlines

Feb 19, 2024

+751-2

Commits on Nov 16, 2023

project maps to streamline points and do math
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Commits on Nov 23, 2023

fixed pep8
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fixed logging line
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fixed trailing whitespace
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removed print statements
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removed useless assert resolution
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Commits on Nov 24, 2023

changed to voxel world coords for interpolation
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fixed dimension error on endpoints only single val
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remove deepcopy
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fixed too long lines
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fixed indent
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fixexed indents
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Commits on Nov 29, 2023

update output dpp name
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Commits on Jan 10, 2024

update master
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add blank unit tests to streamline operations
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Commits on Jan 11, 2024

Commits on Jan 12, 2024

Merge branch 'master' into Project-endpoint-data-to-streamlines
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Commits on Jan 15, 2024

tests passed
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added test for point math
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changed arg name for point math output
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pep 8 long lines
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updated function names in stream_ops
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Commits on Jan 25, 2024

Fixed for loops and added multi input
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updated projection tests with new required args
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Merge remote-tracking branch 'origin/master' into Project-endpoint-data-to-streamlines
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updated point math test with req args
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added test for point math correlation
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Commits on Jan 26, 2024

pep8 fix
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Commits on Jan 29, 2024

Updated doc and logging in point_math
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added dpp and dpp mode argument
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added overwrite functionality
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Commits on Jan 30, 2024

simplify overwrite
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remove append option
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arg multiinput just narg+
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Merge branch 'master' into Project-endpoint-data-to-streamlines
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fixed project map tests
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rm doc reference to endpoints
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update test tractogram point math new args
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updated name of to dpp_math
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update doc for clearer on what happens in 4D case
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remove print
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Commits on Feb 5, 2024

moved project func to new file
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changed metric to map
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changed metric to map
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added dummy test for dpp management
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4D dps math - now outputs array per streamline
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pep8 issues
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Commits on Feb 7, 2024

Merge branch 'master' into Project-endpoint-data-to-streamlines
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pep8
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remove py version file
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added utf header
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Commits on Feb 8, 2024

Commits on Feb 19, 2024

Merge branch 'master' into Project-endpoint-data-to-streamlines
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remove unused StatefulTractogram
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removed extra spaces
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removed default false
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changed to nib.load
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added dual keep_dpp and ovewrite args
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changed map to map_volume
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updated logging in project_map
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remove if statement
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fixed comments in dpp_math
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updated to mode required argument
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added keep_all_dpp_dps option
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moved streamline ops to dps_and_dpp
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blank tests to dps_dpp module
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pep8
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4D data stored as shape (#,) fixed checks
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fixed dimension on tuple
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updated dimension on data_shape
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