This plugin provides wrappers for several programs of NovaCTF software suite.
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-novactf
Developer's version
- download repository
git clone -b devel https://github.com/scipion-em/scipion-em-novactf.git
- install
scipion installp -p /path/to/scipion-em-novactf --devel
NovaCTF binaries will be downloaded and installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/novactf-master, if you want to change it, set NOVACTF_HOME in scipion.conf file to the folder where the NovaCTF is installed.
To check the installation, simply run the test below:
scipion3 tests novactf.tests.test_protocols_novactf.TestNovaCtfReconstructionWorkflow
master (8 Nov 2018)
- compute defocus array
- 3D CTF correction and reconstruction
- Beata Turoňová and Florian K.M. Schur and William Wan and John A.G. Briggs. Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å. Journal of Structural Biology 199 (3), p. 187-195, 2017. doi: https://doi.org/10.1016/j.jsb.2017.07.007