Coloring scipts #30
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Coloring scipts #30
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I've updated these scripts a bit and rebased on top of |
trvrb
approved these changes
Sep 9, 2019
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This PR refers to #17
Creates two different coloring scripts:
assigns_coloring_to_census_tract_seattle_only.pyis, as the name suggests, Seattle specific. It takes inlat_longs.tsvas--coordinates, a--labelwhich for seattle would be 'location' , and a file name as--outputand divides up the Nextstrain color ramp using the latitudes and then lighten/darkens based on the longitudes. Outputs a .tsv fileassigns_coloring_using_tsne.pyis a more generalizable coloring script that takes inlat_longs.tsvas--coordinates, a--label(like "region", 'country', 'location' etc.) and and a file name as--output. The script then uses 1D t-SNE on lat/long to assign colors. Outputs a .tsv file. Can also be used for Seattle by using the optional input--cityand stating "Seattle" which will restrict the census tract bounds to city limits.