updates schedule

sib-swiss · Mar 2, 2023 · 133b2d1 · 133b2d1
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diff --git a/docs/course_material/applications.md b/docs/course_material/applications.md
@@ -12,5 +12,4 @@
 
 * More on [adaptive sampling](https://nanoporetech.com/about-us/news/towards-real-time-targeting-enrichment-or-other-sampling-nanopore-sequencing-devices)
 * More on [Cas9 targeted sequencing ONT](https://nanoporetech.com/resource-centre/target-enrichment-cas9-research-spotlight)
-* More on [Cas9 targeted sequencing PacBio](https://www.pacb.com/applications/targeted-sequencing/no-amp-targeted-sequencing/) (noAmp)
 * [long-read-tools.org](https://long-read-tools.org/index.html)
diff --git a/docs/course_material/group_work/project3.md b/docs/course_material/group_work/project3.md
@@ -8,11 +8,7 @@ You will be working with PacBio sequencing data of five different bacterial stra
 
 There are five different strains: 
 
-- LMB2
-- LWH12
-- LWH7
-- LWO12
-- LWO14
+
 
 Each strain has a tarfile available. Download only the data for the strains that you will require: 
 
@@ -30,26 +26,9 @@ rm "$STRAIN".tar.gz
 
 The downloaded directory has the following structure (here's an example for LWH7):
 
-```
-LWH7
-├── CLR
-│   └── reads
-│       └── LWH7_CLR.fasta.gz
-├── HiFi
-│   └── reads
-│       ├── LWH7_HiFi.fasta.gz
-│       └── LWH7_HiFi.fastq.gz
-└── Illumina
-    ├── assembly
-    │   └── scaffolds_200.fasta
-    └── reads
-        ├── LWH7_1.fastq.gz
-        └── LWH7_2.fastq.gz
-
-7 directories, 6 files
 ```
 
-The directories `CLR` and `HiFi` contain the CLR and HiFi reads respectively. The directories in `Illumina` contain an assembly as produced by `SPAdes`. 
+```
 
 ### Before you start
 

diff --git a/docs/course_schedule.md b/docs/course_schedule.md
@@ -15,10 +15,11 @@
 
 | block   	| start    	| end      	| subject                  	|
 |---------	|----------	|----------	|--------------------------	|
-| block 1 	| 9:15 AM  	| 10:30 AM 	| [Applications](course_material/applications.md) & [Group work](course_material/group_work/group_work.md)         	|
-|         	| 10:30 AM 	| 11:00 AM 	| BREAK                    	|
-| block 2 	| 11:00 AM 	| 12:30 PM 	| [Group work](course_material/group_work/group_work.md)           	|
+| block 1 	| 9:15 AM  	| 10:00 AM 	| Applications - ONT  |
+|         	| 10:00 AM 	| 10:30 AM 	| BREAK                    	|
+| block 2 	| 10:30 AM 	| 11:30 PM 	| Applicationns - PacBio          	|
+| block 3 	| 11:30 AM 	| 12:30 PM 	| [Group work](course_material/group_work/group_work.md)          	|
 |         	| 12:30 PM 	| 1:30 PM  	| BREAK                    	|
-| block 3 	| 1:30 PM  	| 3:00 PM  	| [Group work](course_material/group_work/group_work.md) 	|
+| block 4 	| 1:30 PM  	| 3:00 PM  	| [Group work](course_material/group_work/group_work.md) 	|
 |         	| 3:00 PM  	| 3:30 PM  	| BREAK                    	|
-| block 4 	| 3:30 PM  	| 5:00 PM  	| Presentations               	|
+| block 5 	| 3:30 PM  	| 5:00 PM  	| Presentations               	|
diff --git a/docs/index.md b/docs/index.md
@@ -3,7 +3,6 @@
 ## Teachers
 
 - Geert van Geest [:custom-orcid:](https://orcid.org/0000-0002-1561-078X)
-- Marco Kreuzer [:custom-orcid:](https://orcid.org/0000-0001-6784-0854)
 
 ## Authors