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changes project name
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Geert van Geest committed Mar 13, 2023
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12 changes: 6 additions & 6 deletions docs/course_material/group_work/project1.md
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Expand Up @@ -13,18 +13,18 @@ It is Oxford Nanopore Technology sequencing data of PCR amplicons of the gene CA
You can download the required data like this:

```sh
wget https://ngs-longreads-training.s3.eu-central-1.amazonaws.com/groupwork_ont.tar.gz
tar -xvf groupwork_ont.tar.gz
rm groupwork_ont.tar.gz
wget https://ngs-longreads-training.s3.eu-central-1.amazonaws.com/project1.tar.gz
tar -xvf project1.tar.gz
rm project1.tar.gz
```

!!! note
Download the data file package in your shared working directory, i.e. : `/group_work/<group name>` or `~/<group name>`. Only one group member has to do this.

This will create a directory `groupwork_ont` with the following structure:
This will create a directory `project1` with the following structure:

```
groupwork_ont/
project1/
├── alignments
│ ├── cerebellum-5238-batch2.bam
│ ├── cerebellum-5298-batch2.bam
Expand Down Expand Up @@ -54,7 +54,7 @@ groupwork_ont/
Download the fasta file and gtf like this:

```sh
cd groupwork_ont/
cd project1/
mkdir reference
cd reference
wget ftp://ftp.ensembl.org/pub/release-102/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.chromosome.12.fa.gz
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