[python/ci] Remote-storage CI YAML, part 1 of 2 #43
Workflow file for this run
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| name: TileDB-SOMA Python CI (remote storage) | |
| on: | |
| workflow_dispatch: | |
| # | |
| # Not for regular use: | |
| # TEMP | |
| pull_request: | |
| # | |
| # TODO: a nightly cron | |
| env: | |
| # Don't name this "TILEDB_REST_TOKEN" since that will map into a core | |
| # env/config override, as if config key "rest.token" had been set. One of the | |
| # purposes of this CI is to run tests where all config is passed via context | |
| # arguments and none via environment variables, in order to flush out | |
| # callsites within the code which aren't passing context as they should. | |
| TILEDB_REST_UNITTEST_TOKEN: ${{ secrets.TILEDB_REST_UNITTEST_TOKEN}} | |
| jobs: | |
| ci: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # This could be run on MacOS too, but, we have enough OS redundancy, | |
| # and MacOS-runner availability is a more tightly constrained resource | |
| # in GitHub Actions as of 2025-02-06. | |
| - name: linux | |
| os: ubuntu-24.04 | |
| # TODO: also on 3.12. But 3.9 is higher-pri, until we drop support | |
| # for it. (Note our main CI tests across a broader set of Python | |
| # versions.) | |
| python_version: 3.9 | |
| cc: gcc-13 | |
| cxx: g++-13 | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Show matrix OS | |
| run: echo "matrix.os:" ${{ matrix.os }} | |
| - name: Linux CPU info | |
| if: ${{ matrix.os == 'ubuntu-24.04' }} | |
| run: cat /proc/cpuinfo | |
| - name: MacOS CPU info | |
| if: ${{ matrix.os == 'macOS-latest' }} | |
| run: sysctl -a | grep cpu | |
| - name: Select XCode version | |
| if: startsWith(matrix.os, 'macos') | |
| uses: maxim-lobanov/setup-xcode@v1 | |
| with: | |
| xcode-version: '15.4' | |
| - name: Set up Python ${{ matrix.python_version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| cache: pip | |
| cache-dependency-path: ./apis/python/setup.py | |
| - name: Show XCode version | |
| run: clang --version | |
| - name: Check out TileDB-SOMA | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # ensure we get all tags to inform package version determination | |
| - name: Log pip dependencies | |
| run: pip list | |
| - name: Install tiledbsoma | |
| # If you'reiterating on the testing framework itself, install from PyPI to avoid the | |
| # time-consuming build. If you're trying to evaluate the code modified by a PR, | |
| # install from source. | |
| # | |
| # From PyPI: | |
| # run: pip install tiledbsoma==1.15.7 | |
| # | |
| # From source: | |
| run: pip -v install -e apis/python[all] -C "--build-option=--no-tiledb-deprecated" | |
| # | |
| env: | |
| CC: ${{ matrix.cc }} | |
| CXX: ${{ matrix.cxx }} | |
| - name: Install dependencies | |
| run: pip install --prefer-binary pytest typeguard tiledb.cloud | |
| - name: Show package versions | |
| run: python scripts/show-versions.py | |
| - name: Show tiledb.cloud version | |
| run: python -c 'import tiledb.cloud; print(tiledb.cloud.version.version)' | |
| - name: Run pytests for Python | |
| shell: bash | |
| run: python -m pytest apis/python/remote_tests -v --durations=20 --maxfail=50 |