Cystag #574
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Cystag #574
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trishorts
reviewed
May 23, 2022
| * Hence we do this correction that adds 0, 1, 2, or 3 to correct for the -1, -2, -3 that it will “likely” miss by. | ||
| */ | ||
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| double neuCodeCorrection = Math.Round((this.lysine_count * 0.1667 - 0.4), 0, MidpointRounding.AwayFromZero) * Lollipop.MONOISOTOPIC_UNIT_MASS; |
| @@ -69,8 +92,9 @@ public static double calculate_sum_intensity_olcs(List<ChargeState> light_or_hea | |||
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| public void set_accepted() | |||
| { | |||
| accepted = lysine_count >= Sweet.lollipop.min_lysine_ct && lysine_count <= Sweet.lollipop.max_lysine_ct | |||
| && intensity_ratio >= Convert.ToDouble(Sweet.lollipop.min_intensity_ratio) && intensity_ratio <= Convert.ToDouble(Sweet.lollipop.max_intensity_ratio); | |||
| accepted = (((lysine_count >= Sweet.lollipop.min_lysine_ct && lysine_count <= Sweet.lollipop.max_lysine_ct) && Sweet.lollipop.neucode_labeled) || | |||
| @@ -238,6 +238,7 @@ private void nUD_Missed_Monos_ValueChanged(object sender, EventArgs e) | |||
| private void nUD_Missed_Ks_ValueChanged(object sender, EventArgs e) | |||
| { | |||
| Sweet.lollipop.maximum_missed_lysines = Convert.ToInt32(nUD_Missed_Ks.Value); | |||
| Sweet.lollipop.maximum_missed_cysteines = Convert.ToInt32(nUD_Missed_Ks.Value); | |||
| @@ -93,8 +93,8 @@ | |||
| <ColumnDefinition Width="1*"></ColumnDefinition> | |||
| <ColumnDefinition Width="1.5*"></ColumnDefinition> | |||
| </Grid.ColumnDefinitions> | |||
| <Label Margin="0 0 0 0" Height="23" Grid.Column="0" Grid.Row="0" FontSize="11">K-Min</Label> | |||
| <Label Margin="0,0,0,0" Height="23" Grid.Column="0" Grid.Row="1" FontSize="11">K-Max</Label> | |||
| <TextBlock x:Name="AA_min_textblock" Text="K-Min" Margin="0 0 0 0" Height="23" Grid.Column="0" Grid.Row="0" FontSize="11" /> | |||
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| if(cystag_labeled) | ||
| { | ||
| aaMasses.Add('C', 325.16816); |
| MT Common Variable | ||
| TG C | ||
| PP Anywhere. | ||
| CF C1 H2 S1 |
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i think this formula is wrong if you want it to be negative
C-1 H-2 S-1
| ID MMTS Instead of Carbamidomethyl | ||
| MT Common Variable | ||
| TG C | ||
| PP Anywhere. |
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do you have CF for this?
| this.lysine_count = Math.Abs(Convert.ToInt32(Math.Round((neuCodeHeavy.weighted_monoisotopic_mass - firstCorrection) / Lollipop.NEUCODE_LYSINE_MASS_SHIFT, 0, MidpointRounding.AwayFromZero))); | ||
| if(Sweet.lollipop.neucode_labeled) | ||
| { | ||
| this.lysine_count = Math.Abs(Convert.ToInt32(Math.Round((neuCodeHeavy.weighted_monoisotopic_mass - firstCorrection) / Lollipop.NEUCODE_LYSINE_MASS_SHIFT, 0, MidpointRounding.AwayFromZero))); |
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neucode lysine mass shift?
| * Hence we do this correction that adds 0, 1, 2, or 3 to correct for the -1, -2, -3 that it will “likely” miss by. | ||
| */ | ||
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| double neuCodeCorrection = Math.Round((this.lysine_count * 0.1667 - 0.4), 0, MidpointRounding.AwayFromZero) * Lollipop.MONOISOTOPIC_UNIT_MASS; |
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probably this needs to be updated
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