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Db writer fix #820

Merged
merged 9 commits into from
Jan 10, 2025
Merged

Db writer fix #820

merged 9 commits into from
Jan 10, 2025

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Alexander-Sol
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Writing an XML protein database displays non-deterministic behavior. HashSets (which are inherently unordered) of Modifications are enumerated and the results written to the database one at a time. This can result in the database listing mods in different orders if the write operation is performed multiple times.

This PR fixes the order in which mods are written to the database, with the end goal of improving stability within MetaMorpheus.

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codecov bot commented Jan 7, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 77.28%. Comparing base (dc44773) to head (3fb1b33).

Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #820      +/-   ##
==========================================
+ Coverage   77.26%   77.28%   +0.01%     
==========================================
  Files         218      218              
  Lines       33027    33037      +10     
  Branches     3426     3426              
==========================================
+ Hits        25519    25531      +12     
+ Misses       6938     6937       -1     
+ Partials      570      569       -1     
Files with missing lines Coverage Δ
mzLib/UsefulProteomicsDatabases/ProteinDbWriter.cs 96.81% <100.00%> (+0.63%) ⬆️

nbollis
nbollis previously approved these changes Jan 7, 2025
@nbollis nbollis added the bug label Jan 9, 2025
@nbollis nbollis merged commit 264521b into smith-chem-wisc:master Jan 10, 2025
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4 participants