perf: autobump bio/gdc-client/download

bio/gdc-client/download/environment.linux-64.pin.txt

@@ -0,0 +1,61 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda#a73ecd2988327ad4c8f2c331482917f2
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda#7aca3059a1729aa76c597603f10b0dd3
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_2.conda#9172c297304f2a20134fc56c97fbe229
+https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.7-4_cp37m.conda#d5fa71a1bac31ad985348ffff6b399c4
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_2.conda#e2042154faafe61969556f28bade94b9
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_2.conda#c28003b0be0494f9a7664389146716ff
+https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda#cc47e1facc155f91abd89b11e48e72ff
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
+https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2#b62b52da46c39ee2bc3c162ac7f1804d
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-h59595ed_2.conda#7dbaa197d7ba6032caf7ae7f32c1efa0
+https://conda.anaconda.org/conda-forge/linux-64/openssl-1.1.1w-hd590300_0.conda#301e70057a3bd399640bb16bbdf87995
+https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0
+https://conda.anaconda.org/conda-forge/linux-64/yaml-0.1.7-h14c3975_1001.tar.bz2#87d4d2a2c121377ec81527a7630a96ea
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.43.2-h2797004_0.conda#4b441a1ee22397d5a27dc1126b849edd
+https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.11.5-h232c23b_1.conda#f3858448893839820d4bcfb14ad3ecdf
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8228510_1.conda#47d31b792659ce70f470b5c82fdfb7a4
+https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-h2797004_0.conda#513336054f884f95d9fd925748f41ef3
+https://conda.anaconda.org/conda-forge/linux-64/libxslt-1.1.37-h0054252_1.conda#f27960e8873abb5476e96ef33bdbdccd
+https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.43.2-h2c6b66d_0.conda#c37b95bcd6c6833dacfd5df0ae2f4303
+https://conda.anaconda.org/conda-forge/linux-64/python-3.7.12-hb7a2778_100_cpython.tar.bz2#2d94b3e6a9fdaf83f6955d008c8011a7
+https://conda.anaconda.org/conda-forge/noarch/attrs-23.1.0-pyh71513ae_1.conda#3edfead7cedd1ab4400a6c588f3e75f8
+https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.0.9-py37hd23a5d3_7.tar.bz2#f330e49790eb1af580c0d710e63c8cb0
+https://conda.anaconda.org/conda-forge/noarch/certifi-2023.7.22-pyhd8ed1ab_0.conda#7f3dbc9179b4dde7da98dfb151d0ad22
+https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.3.1-pyhd8ed1ab_0.conda#985378f74689fccce52f158027bd9acd
+https://conda.anaconda.org/conda-forge/noarch/idna-3.4-pyhd8ed1ab_0.tar.bz2#34272b248891bddccc64479f9a7fffed
+https://conda.anaconda.org/conda-forge/linux-64/lxml-4.9.1-py37h540881e_0.tar.bz2#a8906be3fc6b955e81c655a7a6bc601f
+https://conda.anaconda.org/conda-forge/noarch/pkgutil-resolve-name-1.3.10-pyhd8ed1ab_1.conda#405678b942f2481cecdb3e010f4925d9
+https://conda.anaconda.org/conda-forge/noarch/pyasn1-0.5.0-pyhd8ed1ab_0.conda#4b1c0db24e212190be1969b0aa490ad8
+https://conda.anaconda.org/conda-forge/noarch/pycparser-2.21-pyhd8ed1ab_0.tar.bz2#076becd9e05608f8dc72757d5f3a91ff
+https://conda.anaconda.org/conda-forge/linux-64/pyrsistent-0.18.1-py37h540881e_1.tar.bz2#8e25160800dafbc2a24c0aaa99a981ef
+https://conda.anaconda.org/conda-forge/linux-64/pysocks-1.7.1-py37h89c1867_5.tar.bz2#8c4b0563f96363ee99f1ab864616ac63
+https://conda.anaconda.org/conda-forge/linux-64/pyyaml-3.13-py37h14c3975_1001.tar.bz2#aecfa8acd1d3a1c7f561a706b8729f3a
+https://conda.anaconda.org/conda-forge/noarch/setuptools-68.2.2-pyhd8ed1ab_0.conda#fc2166155db840c634a1291a5c35a709
+https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2#e5f25f8dbc060e9a8d912e432202afc2
+https://conda.anaconda.org/conda-forge/noarch/sortedcontainers-2.4.0-pyhd8ed1ab_0.tar.bz2#6d6552722448103793743dabfbda532d
+https://conda.anaconda.org/conda-forge/noarch/termcolor-2.3.0-pyhd8ed1ab_0.conda#440d508f025b1692168caaf436504af3
+https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.7.1-pyha770c72_0.conda#c39d6a09fe819de4951c2642629d9115
+https://conda.anaconda.org/conda-forge/noarch/wheel-0.41.3-pyhd8ed1ab_0.conda#3fc026b9c87d091c4b34a6c997324ae8
+https://conda.anaconda.org/conda-forge/noarch/zipp-3.15.0-pyhd8ed1ab_0.conda#13018819ca8f5b7cc675a8faf1f5fedf
+https://conda.anaconda.org/conda-forge/linux-64/cffi-1.15.1-py37h43b0acd_1.tar.bz2#5111b64bdfdd72d85086ec49c952fe0d
+https://conda.anaconda.org/conda-forge/linux-64/importlib-metadata-4.11.4-py37h89c1867_0.tar.bz2#71107630527e4bd82932952351231efe
+https://conda.anaconda.org/conda-forge/noarch/importlib_resources-6.0.0-pyhd8ed1ab_0.conda#acf36c4210f71dbf45a83409a9b5ff4d
+https://conda.anaconda.org/conda-forge/noarch/intervaltree-3.1.0-pyhd8ed1ab_1.conda#e32bb5b0369e819c4dde653d4c4572f3
+https://conda.anaconda.org/conda-forge/noarch/pip-23.3.1-pyhd8ed1ab_0.conda#2400c0b86889f43aa52067161e1fb108
+https://conda.anaconda.org/conda-forge/noarch/python-utils-3.6.0-pyhd8ed1ab_0.conda#64f841b5319404bbc5962fa8bd7b860a
+https://conda.anaconda.org/conda-forge/noarch/urllib3-2.0.7-pyhd8ed1ab_0.conda#270e71c14d37074b1d066ee21cf0c4a6
+https://conda.anaconda.org/conda-forge/linux-64/cryptography-2.8-py37hb09aad4_2.tar.bz2#96ea0db62af669dbf5a49776e654bc5c
+https://conda.anaconda.org/conda-forge/noarch/jsonschema-4.17.3-pyhd8ed1ab_0.conda#723268a468177cd44568eb8f794e0d80
+https://conda.anaconda.org/conda-forge/noarch/progressbar2-4.2.0-pyhd8ed1ab_0.tar.bz2#d883564cf1e9ba190f6b285036c5f949
+https://conda.anaconda.org/conda-forge/noarch/requests-2.31.0-pyhd8ed1ab_0.conda#a30144e4156cdbb236f99ebb49828f8b
+https://conda.anaconda.org/conda-forge/linux-64/pyopenssl-18.0.0-py37_1000.tar.bz2#43b7c2e9139ad57d86cf27835461541d
+https://conda.anaconda.org/conda-forge/noarch/ndg-httpsclient-0.5.1-py_1.tar.bz2#0204e1481c4cd9065d772f6556f00a16
+https://conda.anaconda.org/bioconda/noarch/gdc-client-1.6.1-pyhdfd78af_0.tar.bz2#21165491799960514af889853eb5c95d

bio/gdc-client/download/environment.yaml

@@ -3,4 +3,4 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - gdc-client =1.6.1
+  - gdc-client =2.0

bio/gdc-client/download/meta.yaml

@@ -1,4 +1,5 @@
 name: "GDC Data Transfer Tool data download"
 description: Download GDC data files with the gdc-client.
+url: https://gdc.cancer.gov/access-data/gdc-data-transfer-tool
 authors:
   - David Lähnemann

test.py

@@ -3192,6 +3192,10 @@ def test_gdc_download():
         "bio/gdc-client/download",
         ["snakemake", "--cores", "1", "raw/testing_sample.maf.gz", "--use-conda", "-F"],
     )
+    run(
+        "bio/gdc-client/download",
+        ["snakemake", "--cores", "1", "raw/testing_sample.bam", "--use-conda", "-F"],
+    )
 
 
 @skip_if_not_modified