Add TPM #13
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| # This workflow builds the HoMi snakefile DAG and colors | |
| name: DAG | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| paths: | |
| - 'snakefile' | |
| pull_request: | |
| branches: [ "main" ] | |
| paths: | |
| - 'snakefile' | |
| permissions: | |
| contents: write | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.11"] | |
| name: DAG | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Graphviz | |
| uses: ts-graphviz/setup-graphviz@v1 | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: Build DAG | |
| run: snakemake --configfile tests/example_config.yaml --dag > dag.dot | |
| - name: Make figures directory | |
| run: mkdir -p figures | |
| - name: Make SVG | |
| run: dot dag.dot -Tsvg > figures/dag.svg | |
| - name: add figure to repo | |
| uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| commit_message: upload DAG from workflow | |
| commit_options: '--no-verify --signoff' | |
| file_pattern: 'figures/dag.svg' | |
| skip_dirty_check: false |