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add nonpareil extra
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sterrettJD committed May 6, 2024
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7 changes: 7 additions & 0 deletions benchmarking/synthetic/synthetic_HoMi_config.yaml
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Expand Up @@ -106,3 +106,10 @@ default_long_partition_name: long
# map_host_slurm_extra: qos=long [email protected]
# All rules would receive the email param,
# and the bbmap host rule would also receive the qos param


###############################
### Extra parameters ###
# we aren't interested in coverage so I'm going to decrease the number of query reads in nonpareil,
# since nonpareil is throwing an error that we're querying too many reads relative to the file size
nonpareil_extra: -X 200

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