fix data reading

sterrettJD · May 9, 2024 · bfe9d0a · bfe9d0a
1 parent d2ed82c
commit bfe9d0a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/rule_utils/counts_to_tpm.py b/src/rule_utils/counts_to_tpm.py
@@ -83,7 +83,7 @@ def main():
         Path(args.output).touch()  
         return
 
-    raw_data = pd.read_csv(args.readcounts)    
+    raw_data = pd.read_csv(args.readcounts, sep="\t", comment="#")
     tpm = convert_dataframe(raw_data)
     tpm.to_csv(args.output, sep="\t")