Merge branch 'testing-actions' of github.com:sterrettJD/HoMiStats int… #25

	name: document

	on:
	push:
	branches: [ "testing-actions" ]

	permissions:
	contents: write


	jobs:
	document:

	runs-on: ubuntu-latest

	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	steps:
	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y libgsl-dev

	- uses: actions/checkout@v3

	- uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: any::roxygen2
	needs: pr-document

	# - name: Specific Rfast dependency
	# run: \|
	# install.packages("remotes")
	# remotes::install_version("Rfast", version = "2.0.8")
	# print(.libPaths()) # Debugging
	# installed_pkgs <- installed.packages()[, "Package"]
	# print(installed_pkgs) # Debugging
	# shell: Rscript {0}

	- name: Document
	run: \|
	roxygen2::roxygenise()
	shell: Rscript {0}

	- name: commit
	run: \|
	git config --local user.name "$GITHUB_ACTOR"
	git config --local user.email "[email protected]"
	git add man/\* NAMESPACE
	git diff --staged --quiet \|\| git commit -m 'Automatic documentation'
	git pull --ff-only
	git push origin

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