Add jq comamnd to update Docker version in CWL (#80)

stjude · Sep 14, 2021 · 69f1ab8 · 69f1ab8
1 parent b69cfad
commit 69f1ab8
Showing 1 changed file with 9 additions and 0 deletions.
diff --git a/.github/workflows/cgc.yml b/.github/workflows/cgc.yml
@@ -8,6 +8,15 @@ jobs:
     name: "Deploy"
     steps:
       - uses: actions/checkout@v2
+      - name: Set the docker tag from Repo Tag
+        id: set_dockertag
+        env:
+          IMAGE: cgc-images.sbgenomics.com/stjude/cicero
+          VERSION_TAG: ${{ github.event.release.tag_name }}
+        run: |
+          jq --arg image "${{ env.IMAGE }}:${{ env.VERSION_TAG }}" '(.requirements | .[] | select(.class == ("DockerRequirement")) | .dockerPull) |= $image' cgc/cicero.cwl > cgc/cicero.cwl.new
+          mv cgc/cicero.cwl.new cgc/cicero.cwl
+          cat cgc/cicero.cwl
       - id: cgcdeploy
         uses: jordan-rash/[email protected]
         with: