Deployed from feat: DNA-Seq workflow 2655ca3

stjudecloud · Jan 13, 2025 · 381b058 · 381b058
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diff --git a/branches/rfcs/atacseq-workflow/drafts.html b/branches/rfcs/atacseq-workflow/drafts.html
@@ -158,6 +158,7 @@ <h1 id="drafts"><a class="header" href="#drafts">Drafts</a></h1>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/atacseq-workflow">rfcs/atacseq-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/chipseq_workflow">rfcs/chipseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/data_versioning">rfcs/data_versioning</a></li>
+<li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/dnaseq_workflow">rfcs/dnaseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/hic-workflow">rfcs/hic-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/qc-workflow">rfcs/qc-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/structural-variation">rfcs/structural-variation</a></li>

diff --git a/branches/rfcs/atacseq-workflow/print.html b/branches/rfcs/atacseq-workflow/print.html
@@ -966,6 +966,7 @@ <h1 id="references"><a class="header" href="#references">References</a></h1>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/atacseq-workflow">rfcs/atacseq-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/chipseq_workflow">rfcs/chipseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/data_versioning">rfcs/data_versioning</a></li>
+<li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/dnaseq_workflow">rfcs/dnaseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/hic-workflow">rfcs/hic-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/qc-workflow">rfcs/qc-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/structural-variation">rfcs/structural-variation</a></li>

diff --git a/branches/rfcs/atacseq-workflow/searchindex.js b/branches/rfcs/atacseq-workflow/searchindex.js
diff --git a/branches/rfcs/atacseq-workflow/searchindex.json b/branches/rfcs/atacseq-workflow/searchindex.json
diff --git a/branches/rfcs/chipseq_workflow/drafts.html b/branches/rfcs/chipseq_workflow/drafts.html
@@ -158,6 +158,7 @@ <h1 id="drafts"><a class="header" href="#drafts">Drafts</a></h1>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/atacseq-workflow">rfcs/atacseq-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/chipseq_workflow">rfcs/chipseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/data_versioning">rfcs/data_versioning</a></li>
+<li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/dnaseq_workflow">rfcs/dnaseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/hic-workflow">rfcs/hic-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/qc-workflow">rfcs/qc-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/structural-variation">rfcs/structural-variation</a></li>

diff --git a/branches/rfcs/chipseq_workflow/print.html b/branches/rfcs/chipseq_workflow/print.html
@@ -1029,6 +1029,7 @@ <h2 id="workflow-2"><a class="header" href="#workflow-2">Workflow</a></h2>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/atacseq-workflow">rfcs/atacseq-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/chipseq_workflow">rfcs/chipseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/data_versioning">rfcs/data_versioning</a></li>
+<li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/dnaseq_workflow">rfcs/dnaseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/hic-workflow">rfcs/hic-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/qc-workflow">rfcs/qc-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/structural-variation">rfcs/structural-variation</a></li>

diff --git a/branches/rfcs/chipseq_workflow/searchindex.js b/branches/rfcs/chipseq_workflow/searchindex.js
diff --git a/branches/rfcs/chipseq_workflow/searchindex.json b/branches/rfcs/chipseq_workflow/searchindex.json
diff --git a/branches/rfcs/data_versioning/drafts.html b/branches/rfcs/data_versioning/drafts.html
@@ -158,6 +158,7 @@ <h1 id="drafts"><a class="header" href="#drafts">Drafts</a></h1>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/atacseq-workflow">rfcs/atacseq-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/chipseq_workflow">rfcs/chipseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/data_versioning">rfcs/data_versioning</a></li>
+<li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/dnaseq_workflow">rfcs/dnaseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/hic-workflow">rfcs/hic-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/qc-workflow">rfcs/qc-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/structural-variation">rfcs/structural-variation</a></li>

diff --git a/branches/rfcs/data_versioning/print.html b/branches/rfcs/data_versioning/print.html
@@ -1058,6 +1058,7 @@ <h4 id="hg005-v301-vs-main-without-giab-confidence-set-rna-seq"><a class="header
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/atacseq-workflow">rfcs/atacseq-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/chipseq_workflow">rfcs/chipseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/data_versioning">rfcs/data_versioning</a></li>
+<li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/dnaseq_workflow">rfcs/dnaseq_workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/hic-workflow">rfcs/hic-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/qc-workflow">rfcs/qc-workflow</a></li>
 <li><a href="https://stjudecloud.github.io/rfcs/branches/rfcs/structural-variation">rfcs/structural-variation</a></li>

diff --git a/branches/rfcs/data_versioning/searchindex.js b/branches/rfcs/data_versioning/searchindex.js
diff --git a/branches/rfcs/data_versioning/searchindex.json b/branches/rfcs/data_versioning/searchindex.json
diff --git a/branches/rfcs/dnaseq_workflow/.nojekyll b/branches/rfcs/dnaseq_workflow/.nojekyll
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		This file makes sure that Github Pages doesn't process mdBook's output.