update readme #67
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| name: CI | |
| on: [push] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| julia-version: ['1.8.4'] #['1.5', '1.7', '1'] | |
| r-version: ['4.2.1'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.julia-version }} | |
| - name: Use libcurl.so from Julia | |
| run: | | |
| sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev libmpfr-dev | |
| # https://github.com/szcf-weiya/Cell-Video/commit/8b81175b4d503057f59f809d05fb3707cc9f3d28#comments | |
| - name: Install Dependencies for R | |
| run: | | |
| r = getOption("repos") | |
| r["CRAN"] = "https://cloud.r-project.org/" | |
| options(repos=r) | |
| options(download.file.method = "wget") | |
| install.packages("RCurl", INSTALL_opts = "--no-test-load") # required by fda | |
| install.packages("fda") | |
| install.packages("lsei") | |
| install.packages("splines") | |
| shell: Rscript {0} | |
| env: | |
| MAKEFLAGS: LDFLAGS=-Wl,-rpath,/opt/hostedtoolcache/julia/${{ matrix.julia-version }}/x64/bin/../lib/julia/\ -L/opt/hostedtoolcache/julia/${{ matrix.julia-version }}/x64/bin/../lib/julia/ | |
| LD_PRELOAD: /opt/hostedtoolcache/julia/${{ matrix.julia-version }}/x64/bin/../lib/julia/libcurl.so.4 | |
| # CURL_CONFIG: 'bash /tmp/mycurl-config' | |
| - uses: julia-actions/julia-runtest@v1 | |
| with: | |
| prefix: xvfb-run | |
| env: | |
| LD_LIBRARY_PATH: /opt/R/${{ matrix.r-version }}/lib/R/lib | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: lcov.info | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: lcov.info | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| julia-version: ['1.8.4'] #['1.5', '1.7', '1'] | |
| r-version: ['4.2.1'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia-version }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Use libcurl.so from Julia | |
| run: | | |
| sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev libmpfr-dev | |
| # https://github.com/szcf-weiya/Cell-Video/commit/8b81175b4d503057f59f809d05fb3707cc9f3d28#comments | |
| - name: Install Dependencies for R | |
| run: | | |
| r = getOption("repos") | |
| r["CRAN"] = "https://cloud.r-project.org/" | |
| options(repos=r) | |
| options(download.file.method = "wget") | |
| install.packages("RCurl", INSTALL_opts = "--no-test-load") # required by fda | |
| install.packages("fda") | |
| install.packages("lsei") | |
| install.packages("splines") | |
| shell: Rscript {0} | |
| env: | |
| MAKEFLAGS: LDFLAGS=-Wl,-rpath,/opt/hostedtoolcache/julia/${{ matrix.julia-version }}/x64/bin/../lib/julia/\ -L/opt/hostedtoolcache/julia/${{ matrix.julia-version }}/x64/bin/../lib/julia/ | |
| LD_PRELOAD: /opt/hostedtoolcache/julia/${{ matrix.julia-version }}/x64/bin/../lib/julia/libcurl.so.4 | |
| # CURL_CONFIG: 'bash /tmp/mycurl-config' | |
| - uses: julia-actions/julia-docdeploy@v1 | |
| env: | |
| LD_LIBRARY_PATH: /opt/R/${{ matrix.r-version }}/lib/R/lib | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # If authenticating with GitHub Actions token | |
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # If authenticating with SSH deploy key | |