bundle updates: add build step for conda R packages & mv competitors … #78
Workflow file for this run
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| name: CI | |
| on: [push] | |
| jobs: | |
| test-and-docs: | |
| name: Julia ${{ matrix.julia-version }} - ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-20.04, ubuntu-22.04] | |
| julia-version: ['1.8'] | |
| python-version: ['3.8'] | |
| r-version: ['4.2.1'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| # actually it seems that without installing `libcurl4-openssl-dev`, there also exists a libcurl.so, but at `/lib/x86_64-linux-gnu/libcurl.so.4` instead of `/usr/lib/x86_64-linux-gnu/libcurl.so.4` | |
| # for consistency with previous setting and also recommended at https://github.com/r-lib/actions/tree/v2/setup-r-dependencies, continue to install `libcurl4-openssl-dev` | |
| - name: Install libcurl on Linux | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev | |
| - name: Install Dependencies for R | |
| run: | | |
| r = getOption("repos") | |
| r["CRAN"] = "https://cloud.r-project.org/" | |
| options(repos=r) | |
| install.packages("fda") | |
| install.packages("lsei") | |
| install.packages("splines") | |
| shell: sudo Rscript {0} | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia-version }} | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # see also: https://stackoverflow.com/questions/8795617/how-to-pip-install-a-package-with-min-and-max-version-range | |
| # https://pip.pypa.io/en/stable/cli/pip_install/#examples | |
| - name: Install Dependencies for Python | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip3 install wheel | |
| pip3 install "torch>=1.9.0" --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip3 install torchsort | |
| pip3 install "numpy>=1.20.2" | |
| pip3 install tqdm | |
| - uses: julia-actions/julia-runtest@v1 | |
| env: | |
| LD_PRELOAD: /usr/lib/x86_64-linux-gnu/libcurl.so.4 | |
| LD_LIBRARY_PATH: /opt/R/${{ matrix.r-version }}/lib/R/lib | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: lcov.info | |
| - uses: julia-actions/julia-docdeploy@v1 | |
| if: ${{ matrix.os == 'ubuntu-20.04' && matrix.julia-version == '1.8' && matrix.python-version == '3.8' }} # only run docs in one env | |
| env: | |
| LD_PRELOAD: /usr/lib/x86_64-linux-gnu/libcurl.so.4 | |
| LD_LIBRARY_PATH: /opt/R/${{ matrix.r-version }}/lib/R/lib | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # If authenticating with GitHub Actions token | |
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # If authenticating with SSH deploy key |