Merge pull request jeromekelleher#326 from jeromekelleher/bugfix

Don't depend on new site metadata
szhan · Oct 2, 2024 · 94386b2 · 94386b2
2 parents 1e8f0df + eb6f64e
commit 94386b2
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/sc2ts/info.py b/sc2ts/info.py
@@ -467,7 +467,7 @@ def _preprocess_sites(self, show_progress):
         self.sites_num_missing_samples = np.zeros(self.ts.num_sites, dtype=int)
         if self.ts.table_metadata_schemas.site.schema is not None:
             for site in self.ts.sites():
-                self.sites_num_missing_samples[site.id] = site.metadata["missing_samples"]
+                self.sites_num_missing_samples[site.id] = site.metadata.get("missing_samples", -1)
         else:
             warnings.warn("Site QC metadata unavailable")