update agat ressources

tdayris · Dec 18, 2023 · 2dbea37 · 2dbea37
1 parent 96fe4df
commit 2dbea37
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/workflow/rules/agat/gff2gtf.smk b/workflow/rules/agat/gff2gtf.smk
@@ -5,10 +5,10 @@ rule agat_gff2gtf:
         gtf="reference/{species}.{build}.{release}.gtf",
     threads: 1
     resources:
-        # Reserve 1Gb per attempt (max_vms: ??? on Flamingo)
-        mem_mb=lambda wildcards, attempt: 1024 * attempt,
-        # Reserve 30min per attempts (hg38: ??? on Flamingo)
-        runtime=lambda wildcards, attempt: 30 * attempt,
+        # Reserve 14Gb per attempt (max_vms: 12786.95 on Flamingo)
+        mem_mb=lambda wildcards, attempt: (1024 * 14) * attempt,
+        # Reserve 20min per attempts (hg38: 0:14:50 on Flamingo)
+        runtime=lambda wildcards, attempt: 20 * attempt,
         tmpdir="tmp",
     log:
         "logs/agat/gff2gtf/{species}.{build}.{release}.log",