formatting error fixed

tdayris · Dec 4, 2023 · f4c9d25 · f4c9d25
1 parent e03150d
commit f4c9d25
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Showing 3 changed files with 5 additions and 3 deletions.
diff --git a/.test/makefile b/.test/makefile
@@ -15,6 +15,7 @@ snakefiles := \
 	"../workflow/rules/raw_data/genome_variation.smk" \
 	"../workflow/rules/samtools/faidx.smk" \
 	"../workflow/rules/common.smk" \
+	"../workflow/rules/pyroe/id_to_name.smk" \
 	"../workflow/Snakefile"
 
 python_scripts := \

diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -7,6 +7,7 @@ include: "rules/gatk/picard_dict.smk"
 include: "rules/samtools/faidx.smk"
 include: "rules/raw_data/blacklist.smk"
 include: "rules/bedtools/merge_blacklist.smk"
+include: "rules/pyroe/id_to_name.smk"
 
 
 rule target:

diff --git a/workflow/rules/pyroe/id_to_name.smk b/workflow/rules/pyroe/id_to_name.smk
@@ -1,14 +1,14 @@
 rule pyroe_id_to_name:
     input:
-        "reference/{species}.{build}.{release}.gtf"
+        "reference/{species}.{build}.{release}.gtf",
     output:
-        "resources/{species}.{build}.{release}/tx2gene.tsv"
+        "resources/{species}.{build}.{release}/tx2gene.tsv",
     threads: 1
     log:
         "logs/pyroe/id2name/{species}.{build}.{release}.log"
     benchmark:
         "benchmark/pyroe/id2name/{species}.{build}.{release}.tsv"
     params:
-        extra="type='salmon'"
+        extra="type='salmon'",
     wrapper:
         f"{snakemake_wrappers_version}/bio/pyroe/idtoname"