Merge remote-tracking branch 'upstream/master'

bio/adapterremoval/environment.linux-64.pin.txt

@@ -3,13 +3,15 @@
 # platform: linux-64
 @EXPLICIT
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+https://conda.anaconda.org/bioconda/linux-64/adapterremoval-2.3.4-pl5321h6dccd9a_0.tar.bz2#46295c24fb766dd0a862af6b0e4f82b5

bio/adapterremoval/environment.yaml

@@ -3,4 +3,4 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - adapterremoval =2.3.3
+  - adapterremoval =2.3.4

bio/bbtools/environment.linux-64.pin.txt

@@ -3,90 +3,93 @@
 # platform: linux-64
 @EXPLICIT
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 https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.16-hb7c19ff_0.conda#51bb7010fc86f70eee639b4bb7a894f5
 https://conda.anaconda.org/conda-forge/linux-64/libcups-2.3.3-h4637d8d_4.conda#d4529f4dff3057982a7617c7ac58fde3
-https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.9.1-hdb1bdb2_0.conda#7da1d242ca3591e174a3c7d82230d3c0
-https://conda.anaconda.org/conda-forge/noarch/setuptools-72.2.0-pyhd8ed1ab_0.conda#1462aa8b243aad09ef5d0841c745eb89
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.10.1-hbbe4b11_0.conda#6e801c50a40301f6978c53976917b277
+https://conda.anaconda.org/conda-forge/noarch/setuptools-75.1.0-pyhd8ed1ab_0.conda#d5cd48392c67fb6849ba459c2c2b671f
 https://conda.anaconda.org/bioconda/noarch/snakemake-wrapper-utils-0.6.2-pyhdfd78af_0.tar.bz2#fd8759bbd04116eace828c4fab906096
 https://conda.anaconda.org/conda-forge/noarch/wheel-0.44.0-pyhd8ed1ab_0.conda#d44e3b085abcaef02983c6305b84b584
-https://conda.anaconda.org/conda-forge/linux-64/xorg-libxext-1.3.4-h0b41bf4_2.conda#82b6df12252e6f32402b96dacc656fec
-https://conda.anaconda.org/conda-forge/linux-64/xorg-libxfixes-5.0.3-h7f98852_1004.tar.bz2#e9a21aa4d5e3e5f1aed71e8cefd46b6a
-https://conda.anaconda.org/conda-forge/linux-64/xorg-libxrender-0.9.11-hd590300_0.conda#ed67c36f215b310412b2af935bf3e530
-https://conda.anaconda.org/conda-forge/linux-64/xorg-libxt-1.3.0-hd590300_1.conda#ae92aab42726eb29d16488924f7312cb
-https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-hebfffa5_3.conda#fceaedf1cdbcb02df9699a0d9b005292
-https://conda.anaconda.org/bioconda/linux-64/htslib-1.20-h5efdd21_2.tar.bz2#f0923cdb85b44dc77bdead8018645ea9
-https://conda.anaconda.org/conda-forge/noarch/pip-24.2-pyhd8ed1ab_0.conda#6721aef6bfe5937abe70181545dd2c51
 https://conda.anaconda.org/conda-forge/linux-64/xorg-libxi-1.7.10-h4bc722e_1.conda#749baebe7e2ff3360630e069175e528b
-https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-9.0.0-hda332d3_1.conda#76b32dcf243444aea9c6b804bcfa40b8
-https://conda.anaconda.org/bioconda/linux-64/samtools-1.20-h50ea8bc_1.tar.bz2#1a4c52f8079fea1b18b3e4bd329bab3a
+https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-hebfffa5_3.conda#fceaedf1cdbcb02df9699a0d9b005292
+https://conda.anaconda.org/bioconda/linux-64/htslib-1.21-h5efdd21_0.tar.bz2#06b995dc2244c024b45bbb3e53ae2f27
+https://conda.anaconda.org/conda-forge/noarch/pip-24.2-pyh8b19718_1.conda#6c78fbb8ddfd64bcb55b5cbafd2d2c43
 https://conda.anaconda.org/conda-forge/linux-64/xorg-libxtst-1.2.5-h4bc722e_0.conda#185159d666308204eca00295599b0a5c
+https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-9.0.0-hda332d3_1.conda#76b32dcf243444aea9c6b804bcfa40b8
+https://conda.anaconda.org/bioconda/linux-64/samtools-1.21-h50ea8bc_0.tar.bz2#4a7fe11223f61cb2d950ed54e20c12ce
 https://conda.anaconda.org/conda-forge/linux-64/openjdk-22.0.1-h8651b0f_1.conda#672153e7c3d4f70bc65993f3ee513768
-https://conda.anaconda.org/bioconda/linux-64/bbmap-39.08-h92535d8_0.tar.bz2#d44de41669589c819303092447b2454a
+https://conda.anaconda.org/bioconda/linux-64/bbmap-39.09-h92535d8_0.tar.bz2#fef2d491a334ba3bb250920b3bc2a414

bio/bbtools/environment.yaml

@@ -3,6 +3,6 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - bbmap =39.08
+  - bbmap =39.09
   - snakemake-wrapper-utils =0.6.2
   - pigz =2.8