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chore: release 5.5.1 (snakemake#3539)
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🤖 I have created a release \*beep\* \*boop\*
---
###
[5.5.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.5.0...v5.5.1)
(2025-01-10)


### Performance Improvements

* autobump bio/cutadapt/pe
([snakemake#3550](https://www.github.com/snakemake/snakemake-wrappers/issues/3550))
([8dc7d5f](https://www.github.com/snakemake/snakemake-wrappers/commit/8dc7d5f7502a3303d1bcd5e12ade1a9490bed7f2))
* autobump bio/cutadapt/se
([snakemake#3549](https://www.github.com/snakemake/snakemake-wrappers/issues/3549))
([fcb5a3d](https://www.github.com/snakemake/snakemake-wrappers/commit/fcb5a3df2d369a046b7a64704ef9e70599507c3e))
* autobump bio/dada2/add-species
([snakemake#3572](https://www.github.com/snakemake/snakemake-wrappers/issues/3572))
([f80df41](https://www.github.com/snakemake/snakemake-wrappers/commit/f80df4197faad4a0e0b51b19fd3fba61aeb76927))
* autobump bio/dada2/assign-species
([snakemake#3567](https://www.github.com/snakemake/snakemake-wrappers/issues/3567))
([b2b8aa6](https://www.github.com/snakemake/snakemake-wrappers/commit/b2b8aa6a371a20e4a67ff40de7b5db65094c5ab0))
* autobump bio/dada2/assign-taxonomy
([snakemake#3566](https://www.github.com/snakemake/snakemake-wrappers/issues/3566))
([4a52888](https://www.github.com/snakemake/snakemake-wrappers/commit/4a52888f15f62d304006b5a75482b5601deb65ed))
* autobump bio/dada2/collapse-nomismatch
([snakemake#3561](https://www.github.com/snakemake/snakemake-wrappers/issues/3561))
([7336f21](https://www.github.com/snakemake/snakemake-wrappers/commit/7336f210dc053734d48c0f59186f0898d4d0f505))
* autobump bio/dada2/dereplicate-fastq
([snakemake#3559](https://www.github.com/snakemake/snakemake-wrappers/issues/3559))
([ff6ae97](https://www.github.com/snakemake/snakemake-wrappers/commit/ff6ae970d5a22ff421a58a10176de8c6f4748e2a))
* autobump bio/dada2/filter-trim
([snakemake#3564](https://www.github.com/snakemake/snakemake-wrappers/issues/3564))
([7a44108](https://www.github.com/snakemake/snakemake-wrappers/commit/7a441087a9670cf37370f276b8d1ba09d7560b23))
* autobump bio/dada2/learn-errors
([snakemake#3562](https://www.github.com/snakemake/snakemake-wrappers/issues/3562))
([cf4d4c5](https://www.github.com/snakemake/snakemake-wrappers/commit/cf4d4c53c2bfde673947b7f6e7e9a38b19f5a1b3))
* autobump bio/dada2/make-table
([snakemake#3560](https://www.github.com/snakemake/snakemake-wrappers/issues/3560))
([ccceca5](https://www.github.com/snakemake/snakemake-wrappers/commit/ccceca5e26819cca359380eb9da1d6b79184cbcc))
* autobump bio/dada2/merge-pairs
([snakemake#3571](https://www.github.com/snakemake/snakemake-wrappers/issues/3571))
([c3ce836](https://www.github.com/snakemake/snakemake-wrappers/commit/c3ce836fa45fc55de7f30fb533dfc050a6c1d168))
* autobump bio/dada2/quality-profile
([snakemake#3570](https://www.github.com/snakemake/snakemake-wrappers/issues/3570))
([f6bec9b](https://www.github.com/snakemake/snakemake-wrappers/commit/f6bec9be5f567e4746f76d6d9507c44c1d52d40c))
* autobump bio/dada2/remove-chimeras
([snakemake#3563](https://www.github.com/snakemake/snakemake-wrappers/issues/3563))
([469ae13](https://www.github.com/snakemake/snakemake-wrappers/commit/469ae1379f3ec450a88a64cfca11a55c05d98dfd))
* autobump bio/dada2/sample-inference
([snakemake#3565](https://www.github.com/snakemake/snakemake-wrappers/issues/3565))
([6abbd40](https://www.github.com/snakemake/snakemake-wrappers/commit/6abbd40309657820b031942c1cf36c466b21bfde))
* autobump bio/delly
([snakemake#3578](https://www.github.com/snakemake/snakemake-wrappers/issues/3578))
([6acdb27](https://www.github.com/snakemake/snakemake-wrappers/commit/6acdb2734dfcd00f3370e2ba805b476fb7c60f47))
* autobump bio/deseq2/deseqdataset
([snakemake#3568](https://www.github.com/snakemake/snakemake-wrappers/issues/3568))
([89ad456](https://www.github.com/snakemake/snakemake-wrappers/commit/89ad4560298f4dc0b1a3e9e72ef1ffb597ed4aee))
* autobump bio/deseq2/wald
([snakemake#3569](https://www.github.com/snakemake/snakemake-wrappers/issues/3569))
([c7d448e](https://www.github.com/snakemake/snakemake-wrappers/commit/c7d448edd69b57d7a5b9637e4cdcc9bf5c22e8f9))
* autobump bio/enhancedvolcano
([snakemake#3551](https://www.github.com/snakemake/snakemake-wrappers/issues/3551))
([e9b05eb](https://www.github.com/snakemake/snakemake-wrappers/commit/e9b05eb7b54ce3223256fc5afb1ac1f08aedcf8a))
* autobump bio/freebayes
([snakemake#3579](https://www.github.com/snakemake/snakemake-wrappers/issues/3579))
([793dbdb](https://www.github.com/snakemake/snakemake-wrappers/commit/793dbdba3e000e6eea3420bda8654ddb9ad0500a))
* autobump bio/gdc-api/bam-slicing
([snakemake#3540](https://www.github.com/snakemake/snakemake-wrappers/issues/3540))
([be07804](https://www.github.com/snakemake/snakemake-wrappers/commit/be078043d1fcc41c0997f02b90827adde311ed34))
* autobump bio/hifiasm
([snakemake#3541](https://www.github.com/snakemake/snakemake-wrappers/issues/3541))
([ac72153](https://www.github.com/snakemake/snakemake-wrappers/commit/ac72153e7731bb55b7b894d355a15575ba4a3eba))
* autobump bio/hifiasm
([snakemake#3552](https://www.github.com/snakemake/snakemake-wrappers/issues/3552))
([78986be](https://www.github.com/snakemake/snakemake-wrappers/commit/78986becb0c434a5c6e275f96c5e3f884d5e376b))
* autobump bio/last/lastal
([snakemake#3554](https://www.github.com/snakemake/snakemake-wrappers/issues/3554))
([ae1eef1](https://www.github.com/snakemake/snakemake-wrappers/commit/ae1eef1a470fae8b9f9b90208dd7eb6b2221e6ea))
* autobump bio/last/lastdb
([snakemake#3553](https://www.github.com/snakemake/snakemake-wrappers/issues/3553))
([783b6eb](https://www.github.com/snakemake/snakemake-wrappers/commit/783b6ebfd20061e3ff47a2c1a409b746b9cdf080))
* autobump bio/multiqc
([snakemake#3573](https://www.github.com/snakemake/snakemake-wrappers/issues/3573))
([a5379bc](https://www.github.com/snakemake/snakemake-wrappers/commit/a5379bc4c08e83d3b66c408557e068074fb3bb8b))
* autobump bio/open-cravat/module
([snakemake#3556](https://www.github.com/snakemake/snakemake-wrappers/issues/3556))
([478426e](https://www.github.com/snakemake/snakemake-wrappers/commit/478426e6be138a833ce61544fe14c6574b7cf92c))
* autobump bio/open-cravat/run
([snakemake#3555](https://www.github.com/snakemake/snakemake-wrappers/issues/3555))
([e4057fb](https://www.github.com/snakemake/snakemake-wrappers/commit/e4057fbf8f8aaf269738f460340156abaed6e663))
* autobump bio/pbmm2/align
([snakemake#3557](https://www.github.com/snakemake/snakemake-wrappers/issues/3557))
([237d150](https://www.github.com/snakemake/snakemake-wrappers/commit/237d1501cdc61dd7333b259f565018e690d36361))
* autobump bio/pbmm2/index
([snakemake#3558](https://www.github.com/snakemake/snakemake-wrappers/issues/3558))
([7b6aa5c](https://www.github.com/snakemake/snakemake-wrappers/commit/7b6aa5ce164a4f1c45716ae9c56dbe6d330c08f3))
* autobump bio/pcaexplorer/pcaplot
([snakemake#3580](https://www.github.com/snakemake/snakemake-wrappers/issues/3580))
([561ea6c](https://www.github.com/snakemake/snakemake-wrappers/commit/561ea6cfbfa73e34c8e191211ee6885fb0e4cd1d))
* autobump bio/sourmash/compute
([snakemake#3543](https://www.github.com/snakemake/snakemake-wrappers/issues/3543))
([c8c8cdb](https://www.github.com/snakemake/snakemake-wrappers/commit/c8c8cdb6d667f703a7ebccd84c2145101ef77ca8))
* autobump bio/subread/featurecounts
([snakemake#3544](https://www.github.com/snakemake/snakemake-wrappers/issues/3544))
([edfac80](https://www.github.com/snakemake/snakemake-wrappers/commit/edfac80c666adfd38742e425e5f8a64a523f36f9))
* autobump bio/tximport
([snakemake#3576](https://www.github.com/snakemake/snakemake-wrappers/issues/3576))
([b41d72b](https://www.github.com/snakemake/snakemake-wrappers/commit/b41d72bc7abbea3e431e432b5fcc845d81ca48b6))
* autobump bio/varlociraptor/call-variants
([snakemake#3548](https://www.github.com/snakemake/snakemake-wrappers/issues/3548))
([b18ec90](https://www.github.com/snakemake/snakemake-wrappers/commit/b18ec90d132ca7964aca7ba448eb3f6917cf6028))
* autobump bio/varlociraptor/control-fdr
([snakemake#3545](https://www.github.com/snakemake/snakemake-wrappers/issues/3545))
([75fae1d](https://www.github.com/snakemake/snakemake-wrappers/commit/75fae1dfc1005b5089cc6a0f434545381755348b))
* autobump bio/varlociraptor/preprocess-variants
([snakemake#3547](https://www.github.com/snakemake/snakemake-wrappers/issues/3547))
([48fa286](https://www.github.com/snakemake/snakemake-wrappers/commit/48fa286dfedb36323c0931972522114c084cbc4f))
* autobump bio/vsearch
([snakemake#3574](https://www.github.com/snakemake/snakemake-wrappers/issues/3574))
([d451c9e](https://www.github.com/snakemake/snakemake-wrappers/commit/d451c9e438b0b9ebfac91e7912f294ae85fced1e))
* autobump utils/datavzrd
([snakemake#3538](https://www.github.com/snakemake/snakemake-wrappers/issues/3538))
([0ed0bda](https://www.github.com/snakemake/snakemake-wrappers/commit/0ed0bda5ec4fc18fd16ffa0511abf59602db17ef))
* autobump utils/datavzrd
([snakemake#3577](https://www.github.com/snakemake/snakemake-wrappers/issues/3577))
([a63bdf9](https://www.github.com/snakemake/snakemake-wrappers/commit/a63bdf9329b3a8140b0e61446275c1acd729bd81))
---


This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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# Changelog

### [5.5.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.5.0...v5.5.1) (2025-01-10)


### Performance Improvements

* autobump bio/cutadapt/pe ([#3550](https://www.github.com/snakemake/snakemake-wrappers/issues/3550)) ([8dc7d5f](https://www.github.com/snakemake/snakemake-wrappers/commit/8dc7d5f7502a3303d1bcd5e12ade1a9490bed7f2))
* autobump bio/cutadapt/se ([#3549](https://www.github.com/snakemake/snakemake-wrappers/issues/3549)) ([fcb5a3d](https://www.github.com/snakemake/snakemake-wrappers/commit/fcb5a3df2d369a046b7a64704ef9e70599507c3e))
* autobump bio/dada2/add-species ([#3572](https://www.github.com/snakemake/snakemake-wrappers/issues/3572)) ([f80df41](https://www.github.com/snakemake/snakemake-wrappers/commit/f80df4197faad4a0e0b51b19fd3fba61aeb76927))
* autobump bio/dada2/assign-species ([#3567](https://www.github.com/snakemake/snakemake-wrappers/issues/3567)) ([b2b8aa6](https://www.github.com/snakemake/snakemake-wrappers/commit/b2b8aa6a371a20e4a67ff40de7b5db65094c5ab0))
* autobump bio/dada2/assign-taxonomy ([#3566](https://www.github.com/snakemake/snakemake-wrappers/issues/3566)) ([4a52888](https://www.github.com/snakemake/snakemake-wrappers/commit/4a52888f15f62d304006b5a75482b5601deb65ed))
* autobump bio/dada2/collapse-nomismatch ([#3561](https://www.github.com/snakemake/snakemake-wrappers/issues/3561)) ([7336f21](https://www.github.com/snakemake/snakemake-wrappers/commit/7336f210dc053734d48c0f59186f0898d4d0f505))
* autobump bio/dada2/dereplicate-fastq ([#3559](https://www.github.com/snakemake/snakemake-wrappers/issues/3559)) ([ff6ae97](https://www.github.com/snakemake/snakemake-wrappers/commit/ff6ae970d5a22ff421a58a10176de8c6f4748e2a))
* autobump bio/dada2/filter-trim ([#3564](https://www.github.com/snakemake/snakemake-wrappers/issues/3564)) ([7a44108](https://www.github.com/snakemake/snakemake-wrappers/commit/7a441087a9670cf37370f276b8d1ba09d7560b23))
* autobump bio/dada2/learn-errors ([#3562](https://www.github.com/snakemake/snakemake-wrappers/issues/3562)) ([cf4d4c5](https://www.github.com/snakemake/snakemake-wrappers/commit/cf4d4c53c2bfde673947b7f6e7e9a38b19f5a1b3))
* autobump bio/dada2/make-table ([#3560](https://www.github.com/snakemake/snakemake-wrappers/issues/3560)) ([ccceca5](https://www.github.com/snakemake/snakemake-wrappers/commit/ccceca5e26819cca359380eb9da1d6b79184cbcc))
* autobump bio/dada2/merge-pairs ([#3571](https://www.github.com/snakemake/snakemake-wrappers/issues/3571)) ([c3ce836](https://www.github.com/snakemake/snakemake-wrappers/commit/c3ce836fa45fc55de7f30fb533dfc050a6c1d168))
* autobump bio/dada2/quality-profile ([#3570](https://www.github.com/snakemake/snakemake-wrappers/issues/3570)) ([f6bec9b](https://www.github.com/snakemake/snakemake-wrappers/commit/f6bec9be5f567e4746f76d6d9507c44c1d52d40c))
* autobump bio/dada2/remove-chimeras ([#3563](https://www.github.com/snakemake/snakemake-wrappers/issues/3563)) ([469ae13](https://www.github.com/snakemake/snakemake-wrappers/commit/469ae1379f3ec450a88a64cfca11a55c05d98dfd))
* autobump bio/dada2/sample-inference ([#3565](https://www.github.com/snakemake/snakemake-wrappers/issues/3565)) ([6abbd40](https://www.github.com/snakemake/snakemake-wrappers/commit/6abbd40309657820b031942c1cf36c466b21bfde))
* autobump bio/delly ([#3578](https://www.github.com/snakemake/snakemake-wrappers/issues/3578)) ([6acdb27](https://www.github.com/snakemake/snakemake-wrappers/commit/6acdb2734dfcd00f3370e2ba805b476fb7c60f47))
* autobump bio/deseq2/deseqdataset ([#3568](https://www.github.com/snakemake/snakemake-wrappers/issues/3568)) ([89ad456](https://www.github.com/snakemake/snakemake-wrappers/commit/89ad4560298f4dc0b1a3e9e72ef1ffb597ed4aee))
* autobump bio/deseq2/wald ([#3569](https://www.github.com/snakemake/snakemake-wrappers/issues/3569)) ([c7d448e](https://www.github.com/snakemake/snakemake-wrappers/commit/c7d448edd69b57d7a5b9637e4cdcc9bf5c22e8f9))
* autobump bio/enhancedvolcano ([#3551](https://www.github.com/snakemake/snakemake-wrappers/issues/3551)) ([e9b05eb](https://www.github.com/snakemake/snakemake-wrappers/commit/e9b05eb7b54ce3223256fc5afb1ac1f08aedcf8a))
* autobump bio/freebayes ([#3579](https://www.github.com/snakemake/snakemake-wrappers/issues/3579)) ([793dbdb](https://www.github.com/snakemake/snakemake-wrappers/commit/793dbdba3e000e6eea3420bda8654ddb9ad0500a))
* autobump bio/gdc-api/bam-slicing ([#3540](https://www.github.com/snakemake/snakemake-wrappers/issues/3540)) ([be07804](https://www.github.com/snakemake/snakemake-wrappers/commit/be078043d1fcc41c0997f02b90827adde311ed34))
* autobump bio/hifiasm ([#3541](https://www.github.com/snakemake/snakemake-wrappers/issues/3541)) ([ac72153](https://www.github.com/snakemake/snakemake-wrappers/commit/ac72153e7731bb55b7b894d355a15575ba4a3eba))
* autobump bio/hifiasm ([#3552](https://www.github.com/snakemake/snakemake-wrappers/issues/3552)) ([78986be](https://www.github.com/snakemake/snakemake-wrappers/commit/78986becb0c434a5c6e275f96c5e3f884d5e376b))
* autobump bio/last/lastal ([#3554](https://www.github.com/snakemake/snakemake-wrappers/issues/3554)) ([ae1eef1](https://www.github.com/snakemake/snakemake-wrappers/commit/ae1eef1a470fae8b9f9b90208dd7eb6b2221e6ea))
* autobump bio/last/lastdb ([#3553](https://www.github.com/snakemake/snakemake-wrappers/issues/3553)) ([783b6eb](https://www.github.com/snakemake/snakemake-wrappers/commit/783b6ebfd20061e3ff47a2c1a409b746b9cdf080))
* autobump bio/multiqc ([#3573](https://www.github.com/snakemake/snakemake-wrappers/issues/3573)) ([a5379bc](https://www.github.com/snakemake/snakemake-wrappers/commit/a5379bc4c08e83d3b66c408557e068074fb3bb8b))
* autobump bio/open-cravat/module ([#3556](https://www.github.com/snakemake/snakemake-wrappers/issues/3556)) ([478426e](https://www.github.com/snakemake/snakemake-wrappers/commit/478426e6be138a833ce61544fe14c6574b7cf92c))
* autobump bio/open-cravat/run ([#3555](https://www.github.com/snakemake/snakemake-wrappers/issues/3555)) ([e4057fb](https://www.github.com/snakemake/snakemake-wrappers/commit/e4057fbf8f8aaf269738f460340156abaed6e663))
* autobump bio/pbmm2/align ([#3557](https://www.github.com/snakemake/snakemake-wrappers/issues/3557)) ([237d150](https://www.github.com/snakemake/snakemake-wrappers/commit/237d1501cdc61dd7333b259f565018e690d36361))
* autobump bio/pbmm2/index ([#3558](https://www.github.com/snakemake/snakemake-wrappers/issues/3558)) ([7b6aa5c](https://www.github.com/snakemake/snakemake-wrappers/commit/7b6aa5ce164a4f1c45716ae9c56dbe6d330c08f3))
* autobump bio/pcaexplorer/pcaplot ([#3580](https://www.github.com/snakemake/snakemake-wrappers/issues/3580)) ([561ea6c](https://www.github.com/snakemake/snakemake-wrappers/commit/561ea6cfbfa73e34c8e191211ee6885fb0e4cd1d))
* autobump bio/sourmash/compute ([#3543](https://www.github.com/snakemake/snakemake-wrappers/issues/3543)) ([c8c8cdb](https://www.github.com/snakemake/snakemake-wrappers/commit/c8c8cdb6d667f703a7ebccd84c2145101ef77ca8))
* autobump bio/subread/featurecounts ([#3544](https://www.github.com/snakemake/snakemake-wrappers/issues/3544)) ([edfac80](https://www.github.com/snakemake/snakemake-wrappers/commit/edfac80c666adfd38742e425e5f8a64a523f36f9))
* autobump bio/tximport ([#3576](https://www.github.com/snakemake/snakemake-wrappers/issues/3576)) ([b41d72b](https://www.github.com/snakemake/snakemake-wrappers/commit/b41d72bc7abbea3e431e432b5fcc845d81ca48b6))
* autobump bio/varlociraptor/call-variants ([#3548](https://www.github.com/snakemake/snakemake-wrappers/issues/3548)) ([b18ec90](https://www.github.com/snakemake/snakemake-wrappers/commit/b18ec90d132ca7964aca7ba448eb3f6917cf6028))
* autobump bio/varlociraptor/control-fdr ([#3545](https://www.github.com/snakemake/snakemake-wrappers/issues/3545)) ([75fae1d](https://www.github.com/snakemake/snakemake-wrappers/commit/75fae1dfc1005b5089cc6a0f434545381755348b))
* autobump bio/varlociraptor/preprocess-variants ([#3547](https://www.github.com/snakemake/snakemake-wrappers/issues/3547)) ([48fa286](https://www.github.com/snakemake/snakemake-wrappers/commit/48fa286dfedb36323c0931972522114c084cbc4f))
* autobump bio/vsearch ([#3574](https://www.github.com/snakemake/snakemake-wrappers/issues/3574)) ([d451c9e](https://www.github.com/snakemake/snakemake-wrappers/commit/d451c9e438b0b9ebfac91e7912f294ae85fced1e))
* autobump utils/datavzrd ([#3538](https://www.github.com/snakemake/snakemake-wrappers/issues/3538)) ([0ed0bda](https://www.github.com/snakemake/snakemake-wrappers/commit/0ed0bda5ec4fc18fd16ffa0511abf59602db17ef))
* autobump utils/datavzrd ([#3577](https://www.github.com/snakemake/snakemake-wrappers/issues/3577)) ([a63bdf9](https://www.github.com/snakemake/snakemake-wrappers/commit/a63bdf9329b3a8140b0e61446275c1acd729bd81))

## [5.5.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.4.0...v5.5.0) (2024-12-10)


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