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JuliaVisualisation/Main_Visualisation_FaultSmearing_MD7.jl
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,228 @@ | ||
| import Pkg | ||
| Pkg.activate(normpath(joinpath(@__DIR__, "."))) | ||
| using HDF5, Printf, Colors, ColorSchemes, MathTeXEngine, LinearAlgebra, FFMPEG, Statistics | ||
| using CairoMakie, GLMakie | ||
| const Mak = GLMakie | ||
| Makie.update_theme!(fonts = (regular = texfont(), bold = texfont(:bold), italic = texfont(:italic))) | ||
|
|
||
| const y = 365*24*3600 | ||
| const My = 1e6*y | ||
| const cm_y = y*100. | ||
|
|
||
| function LoadField(path, istep) | ||
| name = @sprintf("Output%05d.gzip.h5", istep) | ||
| @info "Reading $(name)" | ||
| filename = string(path, name) | ||
|
|
||
| model = ExtractData( filename, "/Model/Params") | ||
| nvx = Int(model[4]) | ||
| nvz = Int(model[5]) | ||
| ncx, ncz = nvx-1, nvz-1 | ||
|
|
||
| fields = ( | ||
| model = ExtractData( filename, "/Model/Params"), | ||
| xc = ExtractData( filename, "/Model/xc_coord"), | ||
| zc = ExtractData( filename, "/Model/zc_coord"), | ||
| xv = ExtractData( filename, "/Model/xg_coord"), | ||
| zv = ExtractData( filename, "/Model/zg_coord"), | ||
| xvz = ExtractData( filename, "/Model/xvz_coord"), | ||
| zvx = ExtractData( filename, "/Model/zvx_coord"), | ||
| xv_hr = ExtractData( filename, "/VizGrid/xviz_hr"), | ||
| zv_hr = ExtractData( filename, "/VizGrid/zviz_hr"), | ||
| τzz_t = ExtractData( filename, "TimeSeries/szzd_mean_time"), | ||
| P_t = ExtractData( filename, "TimeSeries/P_mean_time"), | ||
| τxz_t = ExtractData( filename, "TimeSeries/sxz_mean_time"), | ||
| t_t = ExtractData( filename, "TimeSeries/Time_time"), | ||
| # ηc = ExtractField(filename, "/Centers/eta_n", centroids, true, mask_air), | ||
| ρc = Float64.(reshape(ExtractData( filename, "/Centers/rho_n"), ncx, ncz)), | ||
| P = Float64.(reshape(ExtractData( filename, "/Centers/P"), ncx, ncz)), | ||
| T = Float64.(reshape(ExtractData( filename, "/Centers/T"), ncx, ncz)) .- 273.15, | ||
| d = Float64.(reshape(ExtractData( filename, "/Centers/d"), ncx, ncz)), | ||
| ε̇pl = Float64.(reshape(ExtractData( filename, "/Centers/eII_pl"), ncx, ncz)), | ||
| Vx = Float64.(reshape(ExtractData( filename, "/VxNodes/Vx"), (ncx+1), (ncz+2))), | ||
| Vz = Float64.(reshape(ExtractData( filename, "/VzNodes/Vz"), (ncx+2), (ncz+1))), | ||
| τxx = Float64.(reshape(ExtractData( filename, "/Centers/sxxd"), ncx, ncz)), | ||
| τzz = Float64.(reshape(ExtractData( filename, "/Centers/szzd"), ncx, ncz)), | ||
| τxz = Float64.(reshape(ExtractData( filename, "/Vertices/sxz"), nvx, nvz)), | ||
| ε̇xx = Float64.(reshape(ExtractData( filename, "/Centers/exxd"), ncx, ncz)), | ||
| ε̇zz = Float64.(reshape(ExtractData( filename, "/Centers/ezzd"), ncx, ncz)), | ||
| ε̇xz = Float64.(reshape(ExtractData( filename, "/Vertices/exz"), nvx, nvz)), | ||
| ) | ||
| dummy = ( | ||
| t = fields.model[1], | ||
| τyy = -(fields.τzz .+ fields.τxx), | ||
| ε̇yy = -(fields.ε̇xx .+ fields.ε̇zz), | ||
| ) | ||
| fields = merge(fields, dummy) | ||
| dummy = ( | ||
| τII = sqrt.( 0.5*(fields.τxx.^2 .+ fields.τyy.^2 .+ fields.τzz.^2 .+ 0.5*(fields.τxz[1:end-1,1:end-1].^2 .+ fields.τxz[2:end,1:end-1].^2 .+ fields.τxz[1:end-1,2:end].^2 .+ fields.τxz[2:end,2:end].^2 ) ) ), | ||
| ε̇II = sqrt.( 0.5*(fields.ε̇xx.^2 .+ fields.ε̇yy.^2 .+ fields.ε̇zz.^2 .+ 0.5*(fields.ε̇xz[1:end-1,1:end-1].^2 .+ fields.ε̇xz[2:end,1:end-1].^2 .+ fields.ε̇xz[1:end-1,2:end].^2 .+ fields.ε̇xz[2:end,2:end].^2 ) ) ), | ||
| τxzc = 0.25*(fields.τxz[1:end-1,1:end-1] .+ fields.τxz[2:end,1:end-1] .+ fields.τxz[1:end-1,2:end] .+ fields.τxz[2:end,2:end]), | ||
| ) | ||
| return merge(fields, dummy) | ||
| end | ||
|
|
||
| function ExtractField(filename, field, size, mask_air, mask) | ||
| field = try (Float64.(reshape(ExtractData( filename, field), size...))) | ||
| catch | ||
| @warn "$field not found" | ||
| end | ||
| mask_air ? field[mask] .= NaN : nothing | ||
| return field | ||
| end | ||
|
|
||
| function main() | ||
|
|
||
| # Set the path to your files | ||
| path = ( | ||
| "/Users/tduretz/REPO/MDOODZ7.0/MDLIB/_p10_e18_t3/", | ||
| "/Users/tduretz/REPO/MDOODZ7.0/MDLIB/_p10_e18_t3_nonconv/", | ||
| "/Users/tduretz/REPO/MDOODZ7.0/MDLIB/_p10_e18_t2_nonconv/", | ||
| "/Users/tduretz/REPO/MDOODZ7.0/MDLIB/_p10_e18_t1_nonconv/", | ||
| ) | ||
| names = ( | ||
| "T3: Fully converged", | ||
| "T3: 1 iteration", | ||
| "T2: 1 iteration", | ||
| "T1: 1 iteration", | ||
| ) | ||
| n_files = length(path) | ||
|
|
||
| # File numbers | ||
| file_start = 000 | ||
| file_step = 10 | ||
| file_end = 2000 | ||
|
|
||
| # Select field to visualise | ||
| field = :Phases | ||
| # field = :Cohesion | ||
| # field = :Density | ||
| field = :Viscosity | ||
| # field = :PlasticStrainrate | ||
| # field = :Stress | ||
| # field = :StrainRate | ||
| # field = :Pressure | ||
| # field = :Divergence | ||
| # field = :Temperature | ||
| # field = :Velocity_x | ||
| # field = :Velocity_z | ||
| # field = :Velocity | ||
| # field = :GrainSize | ||
| # field = :Topography | ||
| # field = :TimeSeries | ||
| # field = :AnisotropyFactor | ||
| # field = :MeltFraction | ||
| # field = :TimeSeries | ||
| field = :EffectiveFrictionTime | ||
|
|
||
| # Switches | ||
| printfig = false # print figures to disk | ||
| printvid = false | ||
| framerate = 3 | ||
| PlotOnTop = ( | ||
| ph_contours = false, # add phase contours | ||
| T_contours = false, # add temperature contours | ||
| fabric = false, # add fabric quiver (normal to director) | ||
| topo = false, | ||
| σ1_axis = false, | ||
| vel_vec = false, | ||
| ) | ||
| α_heatmap = 1.0 #0.85 # transparency of heatmap | ||
| vel_arrow = 5 | ||
| vel_scale = 300000 | ||
| nap = 0.1 # pause for animation | ||
| resol = 1000 | ||
| Lx, Lz = 1.0, 1.0 | ||
|
|
||
| # Scaling | ||
| # Lc = 1000. | ||
| # tc = My | ||
| # Vc = 1e-9 | ||
|
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||
| Lc = 1.0 | ||
| tc = My | ||
| Vc = 1.0 | ||
|
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||
| probe = [] | ||
| for i_file=1:n_files | ||
| probe_data = (ϕeff = Float64.([]), t = Float64.([])) | ||
| push!(probe, probe_data) | ||
| end | ||
| cm_yr = 100.0*3600.0*24.0*365.25 | ||
|
|
||
| # Time loop | ||
| f = Figure(size = (Lx/Lz*resol*1.2, resol), fontsize=25) | ||
|
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||
| for istep=file_start:file_step:file_end | ||
|
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||
| dat = [] | ||
| for i_file=1:n_files | ||
| data = LoadField(path[i_file], istep) | ||
| push!(dat, data) | ||
| end | ||
|
|
||
| ##################################### | ||
| empty!(f) | ||
| f = Figure(size = (Lx/Lz*resol*1.2, resol), fontsize=25) | ||
|
|
||
| if field==:EffectiveFrictionTime | ||
| for i_file=1:n_files | ||
| ϕ_eff = -mean(dat[i_file].τxzc[:,end] ./ (dat[i_file].τzz[:,end] .- dat[i_file].P[:,end]) ) | ||
| if istep==0 ϕ_eff = 0. end | ||
| push!(probe[i_file].ϕeff, ϕ_eff) | ||
| push!(probe[i_file].t, dat[i_file].t) | ||
| end | ||
| if istep==file_end | ||
| ax1 = Axis(f[1, 1], title = L"$ϕ_\mathrm{eff}$", xlabel = L"$t$", ylabel = L"$ϕ_\mathrm{eff}$") | ||
| for i_file=1:n_files | ||
| lines!(ax1, Float64.(probe[i_file].t), Float64.(probe[i_file].ϕeff), label=names[i_file]) | ||
| end | ||
| axislegend(ax1, position = :rb) | ||
| end | ||
|
|
||
| end | ||
|
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| if field!=:EffectiveFrictionTime || istep==file_end | ||
| DataInspector(f) | ||
| display(f) | ||
| sleep(nap) | ||
| end | ||
|
|
||
| end | ||
|
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| yscale = Lz/Lx | ||
|
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||
| if printfig && printvid | ||
| FFMPEG.ffmpeg_exe(`-framerate $(framerate) -f image2 -pattern_type glob -i $(path)_$(field)/'*'.png -vf "scale=1080:1080*$(yscale)" -c:v libx264 -pix_fmt yuv420p -y "$(mov_name).mov"`) | ||
| end | ||
|
|
||
| end | ||
|
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||
| function PrincipalStress(τxx, τzz, τxz, P) | ||
| σ1 = (x=zeros(size(τxx)), z=zeros(size(τxx)) ) | ||
| τxzc = 0.25*(τxz[1:end-1,1:end-1] .+ τxz[2:end-0,1:end-1] .+ τxz[1:end-1,2:end-0] .+ τxz[2:end-0,2:end-0]) | ||
| for i in eachindex(τxzc) | ||
| if P[i]>1e-13 | ||
| σ = [-P[i]+τxx[i] τxzc[i]; τxzc[i] -P[i]+τzz[i]] | ||
| v = eigvecs(σ) | ||
| σ1.x[i] = v[1,1] | ||
| σ1.z[i] = v[2,1] | ||
| end | ||
| end | ||
| return σ1 | ||
| end | ||
|
|
||
| function ExtractData( file_path, data_path) | ||
| data = h5open(file_path, "r") do file | ||
| read(file, data_path) | ||
| end | ||
| return data | ||
| end | ||
|
|
||
| function Print2Disk( f, path, field, istep; res=4) | ||
| path1 = path*"/_$field/" | ||
| mkpath(path1) | ||
| save(path1*"$field"*@sprintf("%05d", istep)*".png", f, px_per_unit = res) | ||
| end | ||
|
|
||
| main() |
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