deploy: 775e1c6

404.html

@@ -16,15 +16,15 @@
 
 
       <link rel="icon" href="/starfile/assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.44">
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         <link rel="stylesheet" href="/starfile/assets/stylesheets/palette.06af60db.min.css">
@@ -173,7 +173,7 @@
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+    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.7.1 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
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   <div class="md-source__repository">
     teamtomo/starfile
@@ -219,7 +219,7 @@
       <a href="https://github.com/teamtomo/starfile" title="Go to repository" class="md-source" data-md-component="source">
   <div class="md-source__icon md-icon">
 
-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
+    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.7.1 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
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   <div class="md-source__repository">
     teamtomo/starfile
@@ -428,7 +428,7 @@ <h1>404 - Not found</h1>
     <script id="__config" type="application/json">{"base": "/starfile/", "features": ["navigation.instant", "navigation.expand", "search.highlight", "search.suggest", "content.tabs.link"], "search": "/starfile/assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="/starfile/assets/javascripts/bundle.83f73b43.min.js"></script>
+      <script src="/starfile/assets/javascripts/bundle.88dd0f4e.min.js"></script>
 
 
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examples/merging/index.html

@@ -20,15 +20,15 @@
 
 
       <link rel="icon" href="../../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.44">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.49">
 
 
 
         <title>merging data across tables - teamtomo/starfile</title>
 
 
 
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@@ -182,7 +182,7 @@
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-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
+    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.7.1 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
   </div>
   <div class="md-source__repository">
     teamtomo/starfile
@@ -228,7 +228,7 @@
       <a href="https://github.com/teamtomo/starfile" title="Go to repository" class="md-source" data-md-component="source">
   <div class="md-source__icon md-icon">
 
-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
+    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.7.1 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
   </div>
   <div class="md-source__repository">
     teamtomo/starfile
@@ -463,7 +463,7 @@ <h1 id="merging-data-across-tables">merging data across tables</h1>
 <a href="https://en.wikipedia.org/wiki/Relational_algebra#Joins_and_join-like_operators">relational algebra</a>.
 In pandas, this is implemented as 
 <a href="https://pandas.pydata.org/docs/reference/api/pandas.DataFrame.merge.html"><code>DataFrame.merge()</code></a>.</p>
-<div class="highlight"><pre><span></span><code><span class="kn">import</span> <span class="nn">starfile</span>
+<div class="highlight"><pre><span></span><code><span class="kn">import</span><span class="w"> </span><span class="nn">starfile</span>
 
 <span class="n">star</span> <span class="o">=</span> <span class="n">starfile</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="s1">&#39;particles.star&#39;</span><span class="p">)</span>
 <span class="n">df</span> <span class="o">=</span> <span class="n">star</span><span class="p">[</span><span class="s1">&#39;particles&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">merge</span><span class="p">(</span><span class="n">star</span><span class="p">[</span><span class="s1">&#39;optics&#39;</span><span class="p">],</span> <span class="n">on</span><span class="o">=</span><span class="s1">&#39;rlnOpticsGroup&#39;</span><span class="p">)</span>
@@ -542,7 +542,7 @@ <h1 id="merging-data-across-tables">merging data across tables</h1>
     <script id="__config" type="application/json">{"base": "../..", "features": ["navigation.instant", "navigation.expand", "search.highlight", "search.suggest", "content.tabs.link"], "search": "../../assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="../../assets/javascripts/bundle.83f73b43.min.js"></script>
+      <script src="../../assets/javascripts/bundle.88dd0f4e.min.js"></script>
 
 
   </body>

examples/multi_block/index.html

@@ -22,15 +22,15 @@
 
 
       <link rel="icon" href="../../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.44">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.49">
 
 
 
         <title>multiple data blocks - teamtomo/starfile</title>
 
 
 
-      <link rel="stylesheet" href="../../assets/stylesheets/main.0253249f.min.css">
+      <link rel="stylesheet" href="../../assets/stylesheets/main.6f8fc17f.min.css">
 
 
         <link rel="stylesheet" href="../../assets/stylesheets/palette.06af60db.min.css">
@@ -184,7 +184,7 @@
         <a href="https://github.com/teamtomo/starfile" title="Go to repository" class="md-source" data-md-component="source">
   <div class="md-source__icon md-icon">
 
-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
+    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.7.1 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
   </div>
   <div class="md-source__repository">
     teamtomo/starfile
@@ -230,7 +230,7 @@
       <a href="https://github.com/teamtomo/starfile" title="Go to repository" class="md-source" data-md-component="source">
   <div class="md-source__icon md-icon">
 
-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
+    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.7.1 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
   </div>
   <div class="md-source__repository">
     teamtomo/starfile
@@ -535,7 +535,7 @@ <h2 id="reading">Reading</h2>
 <p>Reading a file with multiple data blocks is similar to reading a file with a single data block.
 In this case, a dictionary of dataframes or dictionaries is returned. The keys of this dictionary are the names
 of data blocks.</p>
-<div class="highlight"><pre><span></span><code><span class="kn">import</span> <span class="nn">starfile</span>
+<div class="highlight"><pre><span></span><code><span class="kn">import</span><span class="w"> </span><span class="nn">starfile</span>
 
 <span class="n">star</span> <span class="o">=</span> <span class="n">starfile</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="s1">&#39;particles.star&#39;</span><span class="p">)</span>
 <span class="n">optics_df</span> <span class="o">=</span> <span class="n">star</span><span class="p">[</span><span class="s1">&#39;optics&#39;</span><span class="p">]</span>
@@ -549,7 +549,7 @@ <h2 id="reading">Reading</h2>
 </div>
 <h2 id="writing">Writing</h2>
 <p>Writing a file containing multiple data blocks is similar, simply pass a dictionary of entries.</p>
-<div class="highlight"><pre><span></span><code><span class="kn">import</span> <span class="nn">starfile</span>
+<div class="highlight"><pre><span></span><code><span class="kn">import</span><span class="w"> </span><span class="nn">starfile</span>
 
 <span class="n">starfile</span><span class="o">.</span><span class="n">write</span><span class="p">(</span>
     <span class="p">{</span><span class="s1">&#39;optics&#39;</span><span class="p">:</span> <span class="n">optics_df</span><span class="p">,</span> <span class="s1">&#39;particles&#39;</span><span class="p">:</span> <span class="n">particle_df</span><span class="p">},</span> <span class="s1">&#39;new_file.star&#39;</span>
@@ -610,7 +610,7 @@ <h2 id="writing">Writing</h2>
     <script id="__config" type="application/json">{"base": "../..", "features": ["navigation.instant", "navigation.expand", "search.highlight", "search.suggest", "content.tabs.link"], "search": "../../assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="../../assets/javascripts/bundle.83f73b43.min.js"></script>
+      <script src="../../assets/javascripts/bundle.88dd0f4e.min.js"></script>
 
 
   </body>