feat: drop airflow orchestration layer from gentropy (opentargets#758)

* refactor: drop gentropy config * feat(airflow): removal of airflow orchestration BREAKING CHANGE: see https://github.com/opentargets/orchestration --------- Co-authored-by: Szymon Szyszkowski <[email protected]>
thehyve · Sep 12, 2024 · d3435bb · d3435bb
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diff --git a/config/__init__.py b/config/__init__.py
diff --git a/config/datasets/ot_gcp.yaml b/config/datasets/ot_gcp.yaml
diff --git a/config/ot_config.yaml b/config/ot_config.yaml
diff --git a/config/step/ot_colocalisation_coloc.yaml b/config/step/ot_colocalisation_coloc.yaml
diff --git a/config/step/ot_colocalisation_ecaviar.yaml b/config/step/ot_colocalisation_ecaviar.yaml
diff --git a/config/step/ot_eqtl_catalogue.yaml b/config/step/ot_eqtl_catalogue.yaml
diff --git a/config/step/ot_gene_index.yaml b/config/step/ot_gene_index.yaml
diff --git a/config/step/ot_gwas_catalog_ingestion.yaml b/config/step/ot_gwas_catalog_ingestion.yaml
diff --git a/config/step/ot_gwas_catalog_study_curation.yaml b/config/step/ot_gwas_catalog_study_curation.yaml
diff --git a/config/step/ot_gwas_catalog_study_inclusion.yaml b/config/step/ot_gwas_catalog_study_inclusion.yaml
diff --git a/config/step/ot_ld_based_clumping.yaml b/config/step/ot_ld_based_clumping.yaml
diff --git a/config/step/ot_ld_index.yaml b/config/step/ot_ld_index.yaml
diff --git a/config/step/ot_locus_to_gene_predict.yaml b/config/step/ot_locus_to_gene_predict.yaml
diff --git a/config/step/ot_locus_to_gene_train.yaml b/config/step/ot_locus_to_gene_train.yaml
diff --git a/config/step/ot_ukb_ppp_eur_sumstat_preprocess.yaml b/config/step/ot_ukb_ppp_eur_sumstat_preprocess.yaml
diff --git a/config/step/ot_variant_index.yaml b/config/step/ot_variant_index.yaml
diff --git a/config/step/ot_variant_to_gene.yaml b/config/step/ot_variant_to_gene.yaml
diff --git a/config/step/session/dataproc.yaml b/config/step/session/dataproc.yaml
diff --git a/docs/development/airflow.md b/docs/development/airflow.md