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trishorts · Aug 25, 2016 · 62eccc3 · 62eccc3
1 parent 03f960c
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diff --git a/.travis.yml b/.travis.yml
@@ -0,0 +1,8 @@
+language: csharp
+solution: mzLib.sln
+install:
+  - nuget restore mzLib.sln
+  - nuget install NUnit.Console -OutputDirectory testrunner
+script:
+  - xbuild /p:Configuration=TestAndReleaseNoThermo mzLib.sln 
+  - mono ./testrunner/NUnit.ConsoleRunner.*/tools/nunit3-console.exe ./Test/bin/Release/Test.dll
diff --git a/Benchmark.txt b/Benchmark.txt
@@ -0,0 +1,59 @@
+At compile time, date and time:
+Thu 08/25/2016 14:29:21.84 
+
+
+At compile time, git show was:
+03f960c47d2af5b1415d6b22fceea992d441817e
+
+
+At compile time, git status was:
+On branch master
+Changes not staged for commit:
+  (use "git add/rm <file>..." to update what will be committed)
+  (use "git checkout -- <file>..." to discard changes in working directory)
+
+	modified:   ../../../mzLib.sln
+	deleted:    ../../../mzLib/Class1.cs
+	deleted:    ../../../mzLib/Properties/AssemblyInfo.cs
+	deleted:    ../../../mzLib/mzLib.csproj
+
+Untracked files:
+  (use "git add <file>..." to include in what will be committed)
+
+	../../../.README.md.swp
+	../../../.travis.yml
+	../../
+	../../../LICENSE
+	../../../README.md
+	../../../Test/
+	../../../TestThermo/
+	../../../mzLib/Chemistry/
+	../../../mzLib/MassSpecFiles/
+	../../../mzLib/MassSpectrometry/
+	../../../mzLib/Proteomics/
+	../../../mzLib/Spectra/
+	../../../mzLib/UsefulProteomicsDatabases/
+
+no changes added to commit (use "git add" and/or "git commit -a")
+
+
+Starting benchmark BenchmarkFormula
+Time for getting formulas: 00:00:00.0269268
+Benchmark BenchmarkFormula finished
+
+Starting benchmark BenchmarkFormula2
+Time for creating and getting formulas: 00:00:03.1089110
+Benchmark BenchmarkFormula2 finished
+
+Starting benchmark BenchmarkTimeGettingElementFromPeriodicTable
+Time for getting by atomic number: 00:00:02.9504046
+Time for getting by atomic symbol: 00:00:05.4800163
+Benchmark BenchmarkTimeGettingElementFromPeriodicTable finished
+
+Starting benchmark BenchmarkGettingIsotopes
+Time for getting isotopes1: 00:00:02.2002061 a = 60000000
+Benchmark BenchmarkGettingIsotopes finished
+
+Starting benchmark BenchmarkIsotopicDistribution
+Time for generating isotopic distributions: 00:00:49.4847722 a = Chemistry.ChemicalFormula
+Benchmark BenchmarkIsotopicDistribution finished
diff --git a/Benchmark/App.config b/Benchmark/App.config
@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="utf-8"?>
+<configuration>
+  <startup>
+    <supportedRuntime version="v4.0" sku=".NETFramework,Version=v4.5.1" />
+  </startup>
+</configuration>
diff --git a/Benchmark/Benchmark.csproj b/Benchmark/Benchmark.csproj
@@ -0,0 +1,111 @@
+<?xml version="1.0" encoding="utf-8"?>
+<Project ToolsVersion="14.0" DefaultTargets="Build" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
+  <Import Project="$(MSBuildExtensionsPath)\$(MSBuildToolsVersion)\Microsoft.Common.props" Condition="Exists('$(MSBuildExtensionsPath)\$(MSBuildToolsVersion)\Microsoft.Common.props')" />
+  <PropertyGroup>
+    <Configuration Condition=" '$(Configuration)' == '' ">Debug</Configuration>
+    <Platform Condition=" '$(Platform)' == '' ">AnyCPU</Platform>
+    <ProjectGuid>{1B73064F-F8F8-44BE-9BDA-986A543DD72A}</ProjectGuid>
+    <OutputType>Exe</OutputType>
+    <AppDesignerFolder>Properties</AppDesignerFolder>
+    <RootNamespace>Benchmark</RootNamespace>
+    <AssemblyName>Benchmark</AssemblyName>
+    <TargetFrameworkVersion>v4.5.1</TargetFrameworkVersion>
+    <FileAlignment>512</FileAlignment>
+    <AutoGenerateBindingRedirects>true</AutoGenerateBindingRedirects>
+    <TargetFrameworkProfile />
+    <NuGetPackageImportStamp>
+    </NuGetPackageImportStamp>
+    <PublishUrl>publish\</PublishUrl>
+    <Install>true</Install>
+    <InstallFrom>Disk</InstallFrom>
+    <UpdateEnabled>false</UpdateEnabled>
+    <UpdateMode>Foreground</UpdateMode>
+    <UpdateInterval>7</UpdateInterval>
+    <UpdateIntervalUnits>Days</UpdateIntervalUnits>
+    <UpdatePeriodically>false</UpdatePeriodically>
+    <UpdateRequired>false</UpdateRequired>
+    <MapFileExtensions>true</MapFileExtensions>
+    <ApplicationRevision>0</ApplicationRevision>
+    <ApplicationVersion>1.0.0.%2a</ApplicationVersion>
+    <IsWebBootstrapper>false</IsWebBootstrapper>
+    <UseApplicationTrust>false</UseApplicationTrust>
+    <BootstrapperEnabled>true</BootstrapperEnabled>
+  </PropertyGroup>
+  <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Release|AnyCPU' ">
+    <PlatformTarget>x64</PlatformTarget>
+    <DebugType>pdbonly</DebugType>
+    <Optimize>true</Optimize>
+    <OutputPath>bin\Release\</OutputPath>
+    <DefineConstants>TRACE</DefineConstants>
+    <ErrorReport>prompt</ErrorReport>
+    <WarningLevel>4</WarningLevel>
+    <TreatWarningsAsErrors>false</TreatWarningsAsErrors>
+  </PropertyGroup>
+  <PropertyGroup Condition="'$(Configuration)|$(Platform)' == 'Debug|AnyCPU'">
+    <OutputPath>bin\Debug\</OutputPath>
+    <PlatformTarget>x64</PlatformTarget>
+  </PropertyGroup>
+  <ItemGroup>
+    <Reference Include="System" />
+    <Reference Include="System.Core" />
+    <Reference Include="System.Xml.Linq" />
+    <Reference Include="System.Data.DataSetExtensions" />
+    <Reference Include="Microsoft.CSharp" />
+    <Reference Include="System.Data" />
+    <Reference Include="System.Net.Http" />
+    <Reference Include="System.Xml" />
+  </ItemGroup>
+  <ItemGroup>
+    <Compile Include="Program.cs" />
+    <Compile Include="Properties\AssemblyInfo.cs" />
+  </ItemGroup>
+  <ItemGroup>
+    <None Include="App.config" />
+  </ItemGroup>
+  <ItemGroup>
+    <BootstrapperPackage Include=".NETFramework,Version=v4.5.1">
+      <Visible>False</Visible>
+      <ProductName>Microsoft .NET Framework 4.5.1 %28x86 and x64%29</ProductName>
+      <Install>true</Install>
+    </BootstrapperPackage>
+    <BootstrapperPackage Include="Microsoft.Net.Framework.3.5.SP1">
+      <Visible>False</Visible>
+      <ProductName>.NET Framework 3.5 SP1</ProductName>
+      <Install>false</Install>
+    </BootstrapperPackage>
+  </ItemGroup>
+  <ItemGroup>
+    <EmbeddedResource Include="show.txt">
+      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
+    </EmbeddedResource>
+  </ItemGroup>
+  <ItemGroup>
+    <EmbeddedResource Include="status.txt">
+      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
+    </EmbeddedResource>
+  </ItemGroup>
+  <ItemGroup>
+    <EmbeddedResource Include="buildDate.txt">
+      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
+    </EmbeddedResource>
+  </ItemGroup>
+  <ItemGroup>
+    <ProjectReference Include="..\mzLib\Chemistry\Chemistry.csproj">
+      <Project>{cbe368bb-fc84-458d-8099-87a63d17aa3b}</Project>
+      <Name>Chemistry</Name>
+    </ProjectReference>
+  </ItemGroup>
+  <Import Project="$(MSBuildToolsPath)\Microsoft.CSharp.targets" />
+  <PropertyGroup>
+    <PreBuildEvent>"C:\Program Files\Git\bin\git.exe" status &gt; "$(ProjectDir)\status.txt"
+"C:\Program Files\Git\bin\git.exe" rev-parse HEAD &gt; "$(ProjectDir)\show.txt"
+echo %25date%25 %25time%25 &gt; "$(ProjectDir)\buildDate.txt"</PreBuildEvent>
+  </PropertyGroup>
+  <!-- To modify your build process, add your task inside one of the targets below and uncomment it. 
+       Other similar extension points exist, see Microsoft.Common.targets.
+  <Target Name="BeforeBuild">
+  </Target>
+  <Target Name="AfterBuild">
+  </Target>
+  -->
+</Project>