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Add 2D covariant form using P4estMesh#31

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tristanmontoya wants to merge 89 commits intomaintrixi-framework/TrixiAtmo.jl:mainfrom tm/covariant_formtrixi-framework/TrixiAtmo.jl:tm/covariant_formCopy head branch name to clipboard

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Commits on Jul 18, 2024

• linear advection on the sphere

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• formatter

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  8236b78

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• very preliminary implementation of covariant form with p4est

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• removed untracked

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• removed allocations, now 100x faster

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• add DS_Store to gitignore

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• add DS_Store to gitignore

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• made equations actually 2D

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• integrated upstream changes

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• analysis callback for covariant form

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Commits on Jul 19, 2024

• cleanup

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Commits on Jul 25, 2024

• separate Andres's spherical shell containers from main Trixi

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Commits on Jul 26, 2024

• Added containers and 2D p4est mesh from my spherical shell implementation in Trixi.jl (cherry-picked from f45378e)

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• Added element container with PtrArray for performance and modified the structure

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• format

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• Fixed bug in the definition of init_elements and added nelements(). eltype() and ndims() functions for new struct

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Commits on Jul 29, 2024

• Merge remote-tracking branch 'origin/arr/spherical_shell' into tm/p4est_new_container

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• integrated Andres's new container type with covariant solver

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Commits on Aug 6, 2024

• Merge remote-tracking branch 'origin/main' into tm/p4est_new_container

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Commits on Aug 8, 2024

• added flux-differencing kernel for covariant form

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Commits on Aug 15, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_flux_differencing

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• integrated Andrés' PR with covariant solver

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Commits on Aug 17, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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• add tests for spherical advection in Cartesian coords

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• revert change to moist bubble case

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• revert change to moist bubble case

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• Merge branch 'tm/test_spherical_advection' into tm/covariant_form

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• covariant weak form with tests

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• removed shallow water from this branch

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Commits on Aug 18, 2024

• reorganize a bit

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Commits on Aug 20, 2024

• hard-code dimension of node coordinates to avoid type instability

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• metric terms for shell of radius != 1

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• Merge remote-tracking branch 'origin/tm/test_spherical_advection' into tm/covariant_form

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Commits on Aug 21, 2024

• test for covariant form is now on earth scale

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Commits on Aug 22, 2024

• fix name of cartesian test

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Commits on Sep 1, 2024

• moved i,j,element,cache into flux signatures for covariant form

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• added test for flux differencing covariant form

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• Merge branch 'main' into tm/covariant_form

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Commits on Sep 4, 2024

• transformation between local coordinate systems now uses latitude-longitude as intermediate state, not Cartesian

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• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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• format

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Commits on Sep 7, 2024

• make compatible with my PR trixi-framework/Trixi.jl#2068

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• Merge remote-tracking branch 'origin/tm/p4est_mesh_compat' into tm/covariant_form

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Commits on Sep 9, 2024

• separate containers to store geometric information specific to covariant form

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Commits on Sep 10, 2024

• add element-local mapping from Guba et al.

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• add reference to Guba et al. to docstring

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• Merge branch 'tm/element_local_mapping' into tm/covariant_form

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• new mapping works with cartesian solver solver in covariant_form branch

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• exact metrics for element-local mapping

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• streamline tests and improve readability

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• rename default DGSEM mapping

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• Merge branch 'tm/element_local_mapping' into tm/covariant_form

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Commits on Sep 11, 2024

• didn't need new analysis cache

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• improve comments

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Commits on Sep 12, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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Commits on Sep 13, 2024

• refactor

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• remove DiffEqCallbacks for now

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Commits on Sep 14, 2024

• add better comments

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• improve comments

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• better documentation

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Commits on Sep 15, 2024

• add NDIMS_AMBIENT parameter to equations

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Commits on Oct 5, 2024

• Merge remote-tracking branch 'origin/main' into tm/element_local_mapping

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• fix docstring format

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• Merge branch 'tm/element_local_mapping' into tm/covariant_form

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• make link in docs work

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• fix link in docs

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• Merge branch 'tm/element_local_mapping' into tm/covariant_form

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• documentation for the covariant solver

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Commits on Oct 12, 2024

• added surface central flux and test

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• fix trixi_compat

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• specialize compute_coefficients! to dimension 2

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• format

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• fix spelling

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• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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Commits on Oct 17, 2024

• remove initial_condition parameter from rhs

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Commits on Nov 4, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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• no need to use Float32 for physical constant defaults

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• incorporate downstream changes

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• format

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Commits on Nov 6, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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Commits on Nov 10, 2024

• merge changes from PR #36 (work in progress)

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Commits on Nov 11, 2024

• standardize test cases

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• move covariant form max_dt method to callbacks_step

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• Fix comments

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  4f1b3dc

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• generalize interface between equations and cache

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• relax relative tolerance on cartesian advection test)

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Commits on Nov 12, 2024

• improve docs

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Commits on Nov 13, 2024

• streamline initial condition definition and improve docs

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• tests for cartesian form now use standard and element-local mapping approaches

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