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Variant data #956

Merged
merged 1 commit into from
Aug 29, 2024
Merged

Variant data #956

merged 1 commit into from
Aug 29, 2024

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hyanwong
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@hyanwong hyanwong commented Aug 28, 2024

Add example of excluding chromosomes using site masks, and change zarr.load() to the more recommended zarr.open().

We have had some users try to infer with VCFs containing multiple chromosomes, so the examples here are useful.

And switch to the preferred `zarr.open` instead of `zarr.load`.
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codecov bot commented Aug 28, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 93.23%. Comparing base (1c355ae) to head (962b7eb).
Report is 1 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #956   +/-   ##
=======================================
  Coverage   93.23%   93.23%           
=======================================
  Files          18       18           
  Lines        6299     6299           
  Branches     1139     1139           
=======================================
  Hits         5873     5873           
  Misses        290      290           
  Partials      136      136           
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python 95.65% <ø> (ø)

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@jeromekelleher jeromekelleher left a comment

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LGTM

@mergify mergify bot merged commit a98a019 into tskit-dev:main Aug 29, 2024
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2 participants