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Version 0.2.5 #106

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Oct 9, 2024
Merged

Version 0.2.5 #106

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630454e
setup
twallema Oct 9, 2024
5a0ff08
update readme
twallema Oct 9, 2024
e6fff70
postpone publication with one PR
twallema Oct 9, 2024
7456c75
Merge branch 'master' into bump-the-version
twallema Oct 9, 2024
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -62,7 +62,7 @@ Does other simulation software exist in Python? Sure, but most of them hold your
> Fixed minor bugs encountered when using pySODM for a dynamic input-output model of the Belgian economy. Published to pyPI.
- Version 0.2.4 (2023-12-04, PR #62)
> Validated the use of Python 3.11. Efficiency gains in simulation of jump processes. Ommitted dependency on Numba. All changes related to publishing our software manuscript in Journal of Computational Science. Improved nomenclature in model defenition.
- IN PROGRESS: 0.2.5
- Version 0.2.5 (2024-10-08, PR #106)
> Validated the use of Python 3.12. Validated pySODM on macOS Sonoma 14.5. 'draw functions' only have 'parameters' as mandatory input, followed by an arbitrary number of additional parameters (PR #75). Tutorial environment can now be found in `tutorial_env.yml` and was renamed `PYSODM-TUTORIALS` (PR #76). Users can choose when the simulation starts when calibrating a model (PR #92). Initial model states can now be a function returning a dictionary of states. This initial condition function can have arguments, which become part of the model's parameters, and can therefore be optimised (PR #99). Deprecation of legacy 'warmup' parameter (PR #100). Change 'states' --> 'initial_states' as input needed to initialize a model (PR #102).
- Version 0.1 (2022-12-23, PR #14)
> Application pySODM to three use cases. Documentation website. Unit tests for ODE, JumpProcess and calibration.
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6 changes: 3 additions & 3 deletions setup.py
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Expand Up @@ -4,10 +4,10 @@
name='pySODM',
packages=find_packages("src", exclude=["*.tests"]),
package_dir={'': 'src'},
version='0.2.4',
version='0.2.5',
description='Simulating and Optimising Dynamical Models',
author='Tijs Alleman, KERMIT, Ghent University',
author_email='[email protected]',
author='Tijs Alleman (Ghent University, Johns Hopkins Bloomberg School of Public Health)',
author_email='[email protected], [email protected]',
keywords='ODE PDE simulation calibration gillespie xarray emcee',
url='https://github.com/twallema/pySODM',
long_description=open('README.md').read(),
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