methylCRF 1.2

Because of bedtools requirement, please make sure all the bed files used for the tool has been sorted using sort -k1,1V -k2,2n

1.2 update:

• sort bedfiles before mapBed

1.1 update:

• Replace olapBed with mapBed in bedtools
• Fix a compiling error of crfasgd on mac

about this tool:

• Estimate genome wide methylation level at each CpG sites using MeDIP-seq and MRE-seq data. Please read methylcrf website for more information.
• Publication: Stevens_GenomeResearch2013

How to install:

• step1: install bedtools.
• step2: make

Enjoy!